Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11300 214 / 1e-66 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT1G15570 211 / 9e-66 CYCA2;3 CYCLIN A2;3 (.1) AT1G80370 203 / 2e-62 CYCA2;4 Cyclin A2;4 (.1) AT5G25380 202 / 2e-62 CYCA2;1 cyclin a2;1 (.1) AT1G44110 158 / 2e-45 CYCA1;1 Cyclin A1;1 (.1) AT1G77390 149 / 5e-42 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT1G47230 144 / 2e-40 CYCA3;4 CYCLIN A3;4 (.1.2) AT5G43080 143 / 2e-40 CYCA3;1 Cyclin A3;1 (.1) AT1G47210 143 / 3e-40 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47220 130 / 1e-35 CYCA3;3 Cyclin A3;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008103 [exp] 299 / 2e-99 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10029700 [exp] 149 / 9e-42 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10042739 [exp] 150 / 2e-41 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10028544 [exp] 146 / 6e-41 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10018715 [exp] 142 / 1e-39 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10024822 [exp] 140 / 6e-39 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10014199 [exp] 139 / 2e-38 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10013886 [exp] 108 / 4e-27 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10030746 [exp] 95 / 5e-22 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034100 [exp] 241 / 9e-77 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.006G247200 [exp] 234 / 6e-74 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G177100 [exp] 214 / 2e-66 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.003G058200 [exp] 202 / 7e-62 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.014G021100 [exp] 152 / 6e-44 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.002G121500 [exp] 149 / 8e-43 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.002G080000 [exp] 149 / 9e-42 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.005G181400 [exp] 147 / 6e-41 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.009G093100 [exp] 128 / 2e-34 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G010000 [exp] 97 / 7e-23 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013140 pacid=23164130 polypeptide=Lus10013140 locus=Lus10013140.g ID=Lus10013140.BGIv1.0 annot-version=v1.0 ATGGACAAGGAGAACAGAAATGGCGCAGGAGGTCAGGAACCGGGTGTTCGGATTACCCGAGCACGTGCCAGAGCTCTTGGGGTCTCCGGAGCTGCGAAAA CCTCCGTTAATCAGGATCAGCGGGGTGTTCTTAAAGTAAGTACAAAAAGACAAGCGTCGGAGGAGAACAAAGCTTCTGGAATGGGGGCTGCTGGAGCTCA GTGCAAAAAAAGGGCAGTGCTAAAAGAGGTGACTAATAGCTTAACAGAGGGTTCATATGCTAGCATCATCAATGCAACCAAAGCTCAGTATGAAGAAATT TGTGCTCCACGGGTTGAGGAGTTCTGCTTCATTACTGACAATACGTACACAAAAGAAGAGGTATTGGAAATGGAGAGACGAGTTCTCAACTTATTGCACT TCCAATTATCAGTTCCCACCCCGAAGACGCTTCTGAGGAGATTCATTCAAGCTGCACAGTCTTCTTACAAGGATCCTTGTGTTGAACTGGAGCTTTTGGC AAATTATCTAGCGGAGTTGACTCTTGTTGAATATAACTTCATAAAGATCTTACCTTCCTTGGTTGCTGCATCTGCCGTGTTTCTCGCTCGATGGACACTT AATCAGTCGGATAATCCCTGGAATCCAACTCTAGAACATTACACTAATTACAAGGCTCCTGAACTAAAAAGTACAGTACTCGCGCTCGAAGATCTGCAGC TCAACATTACTAGTTGCCCCCTCAATGCCATACGCGAAAAGTACAGACATCAGAAGACAAAGTCTTATGTTGATGATCCTCACTTGCTATCAATCTTTGG AACTAGGGTGCTCACTTGGTTACGGTAA
AA sequence Show only first row Show all	>Lus10013140 pacid=23164130 polypeptide=Lus10013140 locus=Lus10013140.g ID=Lus10013140.BGIv1.0 annot-version=v1.0 MDKENRNGAGGQEPGVRITRARARALGVSGAAKTSVNQDQRGVLKVSTKRQASEENKASGMGAAGAQCKKRAVLKEVTNSLTEGSYASIINATKAQYEEI CAPRVEEFCFITDNTYTKEEVLEMERRVLNLLHFQLSVPTPKTLLRRFIQAAQSSYKDPCVELELLANYLAELTLVEYNFIKILPSLVAASAVFLARWTL NQSDNPWNPTLEHYTNYKAPELKSTVLALEDLQLNITSCPLNAIREKYRHQKTKSYVDDPHLLSIFGTRVLTWLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	0	1
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	1.4	0.9712
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10019316 [exp]	2.0	0.9701
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10003236 [exp]	4.2	0.9627
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	5.3	0.9639
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	5.5	0.9554
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	5.8	0.9364
AT1G16630			unknown protein		Lus10006845 [exp]	6.0	0.9641
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	7.0	0.9615
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	7.4	0.9635
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	8.8	0.9573

Compare expression of checked genes

Lus10013140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.