Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60400 538 / 0 Mitochondrial transcription termination factor family protein (.1) AT5G06810 143 / 1e-35 Mitochondrial transcription termination factor family protein (.1) AT4G19650 97 / 5e-21 Mitochondrial transcription termination factor family protein (.1) AT5G45113 83 / 8e-17 mitochondrial transcription termination factor-related / mTERF-related (.1) AT1G62150 63 / 2e-10 Mitochondrial transcription termination factor family protein (.1) AT1G61980 62 / 4e-10 Mitochondrial transcription termination factor family protein (.1) AT1G61970 61 / 8e-10 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 57 / 2e-08 Mitochondrial transcription termination factor family protein (.1) AT5G07900 57 / 2e-08 Mitochondrial transcription termination factor family protein (.1) AT1G62120 57 / 3e-08 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039774 [exp] 162 / 2e-43 AT5G06810 398 / 5e-127 Mitochondrial transcription termination factor family protein (.1) Lus10038336 [exp] 157 / 3e-41 AT4G19650 475 / 2e-162 Mitochondrial transcription termination factor family protein (.1) Lus10012021 [exp] 153 / 9e-40 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10018548 [exp] 88 / 3e-18 AT5G06810 271 / 5e-81 Mitochondrial transcription termination factor family protein (.1) Lus10021146 [exp] 48 / 2e-05 AT1G74120 468 / 3e-163 Mitochondrial transcription termination factor family protein (.1) Lus10007988 [exp] 47 / 4e-05 AT1G74120 475 / 6e-166 Mitochondrial transcription termination factor family protein (.1) Lus10010714 [exp] 45 / 6e-05 AT4G38840 117 / 3e-33 SAUR-like auxin-responsive protein family (.1) Lus10029199 [exp] 46 / 7e-05 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 45 / 0.0002 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044900 [exp] 632 / 0 AT3G60400 598 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G048300 [exp] 175 / 8e-48 AT5G06810 485 / 2e-159 Mitochondrial transcription termination factor family protein (.1) Potri.012G118200 [exp] 166 / 2e-44 AT4G19650 549 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G048200 [exp] 157 / 3e-41 AT5G06810 501 / 3e-165 Mitochondrial transcription termination factor family protein (.1) Potri.016G048400 [exp] 156 / 4e-41 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.015G115701 [exp] 68 / 2e-13 AT4G19650 139 / 2e-39 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 59 / 6e-09 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 56 / 4e-08 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.009G116200 [exp] 54 / 2e-07 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.006G205000 [exp] 51 / 1e-06 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10013142 pacid=23164176 polypeptide=Lus10013142 locus=Lus10013142.g ID=Lus10013142.BGIv1.0 annot-version=v1.0 ATGCCAATTTCAAAATCCCTTTGCGCCATTCTCCGCCGGAACTTCAGCTCACTCCCCAAGCCGCCGCCGCCACCGAAAATACCCAATATCCCATACAAGT ACCGACGTCGGCTAATAAGAAAAGCTACACAAGTCCTCACAGACTATCTCCACGTCACAAAGTCACTCCCCTACACCTACGCAGAGCACATCAGCAAGAA CTCCACCAAATCCCTCACCATTCTCATGTCCAACGTCGAATTCTCCAAATCCGAAGACGAATACTCCAAATCCCTCCGCAAGTTCCTCAGGTACCATCCG ATCAACGAGCTGCAGTTCTTCTACGAAAGCCTCGGGATCGACTACGCCGAAGTTCGCGACTTCCTTCCGCGGGACAAGTTCTTATTTTCCGAGGATGGAT CCGCTTTAGGAGTTTCTTGTGCGCTTTCTAGATTTGGGTTCCCATGGAACAAGCTTGGGATGCTGTATAGGGAAGAAATGGGTATTTTCACAATGTCGCC TGAGGAGATAACGAGTAGGCTTCATAAGTTTAAAGGTTATGGGTTTGGTAATACTTCAGTGATTGGCATTTGCATGGCGTTTTCTTATCTGTTGAATGGT GGTGAATCGGATGCTTTGTTACACGATTTGAAGATTATTTTTGTGGATTTTGAATTGGGGAGCTCTGTTGAAGCAAATGTTGATGCTTGGTATGAAATTT GTAGGAAGCTTAGATTGTTCTATGATTTAGGGTGTGAGAAGGGGAAAGTAGGGGAGCTTATTGGTAGGAATAAGAACATTTTTACAGATTTCTCAGCTGA AGTTTTGACAGATAAGGTACAGTATTTCTGCAAGCTTGGAGTGAACAAGATGGAACTAGCTCTTTTGATTCTAGAGAAGCCTGAACTTTTGGAGTTTGAT TTAGGGCCACAGGTGATTTCAGTAGAGCAAGTGTTGAGGCACTTCGGATTGAGCGACGAACGATTCGATACCGTTTACGAAAGATATCCACATGCATTCG GGAGGAACAAAATGGCGAACCTCCCTCATATTCTTCGAGCTATGGAATTGCATGATTGGTTCTTTGACAGACTGAAGAACGGAGATCATCGCTTGTTGGG TAGTTATGTGATGAGCGATCGTGAAGAAGATCGAGATAAGGAGTTTCTCGACGGGTTGGAAAGGATCTCAGTGTCGAGACCAGTGCATACCATGAGTAAA CTTGATTTCCTACACGGGATTGGGTTCGGGGAGAATGGTTTTACCATCAAGGCGATAAGTTACGTGCAGGGTACGAAAAAGGAATTGCAGGAGCGGTTCG ATAACTTGCTTAATGCAGGAATCGAGTTCTCAAAGCTCTGTGAGATAATCAGAATCATGCCGAAGATTCTGAATCAGAGTCCGGATATGATTCAGAGGAA AATTGAATATTTATGCAAGGAGATGGGGTTTCCTTTGCAGTATCTCTATCAATACCCAGGGTTCTTGAATTATAACTTGGAGAATCGGATAATACCAAGG TTCCGGTTTCACTCGTGGCTTGTGGAGAAGGGGTTGATTACTAATAAGTATTCTATTGGGAGTATAGTTGCACCCAGTGAAAAGAATTTCATACACCGTT TGAATATTATTCATCCAGCGGTTGCGAAGCATTGGTTTGAGCGTTCTGCTGATAATGATTTGGTACTGAACCAAGTTCATAAGTGA
AA sequence Show only first row Show all	>Lus10013142 pacid=23164176 polypeptide=Lus10013142 locus=Lus10013142.g ID=Lus10013142.BGIv1.0 annot-version=v1.0 MPISKSLCAILRRNFSSLPKPPPPPKIPNIPYKYRRRLIRKATQVLTDYLHVTKSLPYTYAEHISKNSTKSLTILMSNVEFSKSEDEYSKSLRKFLRYHP INELQFFYESLGIDYAEVRDFLPRDKFLFSEDGSALGVSCALSRFGFPWNKLGMLYREEMGIFTMSPEEITSRLHKFKGYGFGNTSVIGICMAFSYLLNG GESDALLHDLKIIFVDFELGSSVEANVDAWYEICRKLRLFYDLGCEKGKVGELIGRNKNIFTDFSAEVLTDKVQYFCKLGVNKMELALLILEKPELLEFD LGPQVISVEQVLRHFGLSDERFDTVYERYPHAFGRNKMANLPHILRAMELHDWFFDRLKNGDHRLLGSYVMSDREEDRDKEFLDGLERISVSRPVHTMSK LDFLHGIGFGENGFTIKAISYVQGTKKELQERFDNLLNAGIEFSKLCEIIRIMPKILNQSPDMIQRKIEYLCKEMGFPLQYLYQYPGFLNYNLENRIIPR FRFHSWLVEKGLITNKYSIGSIVAPSEKNFIHRLNIIHPAVAKHWFERSADNDLVLNQVHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60400			Mitochondrial transcription te...		Lus10013142 [exp]	0	1
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	3.0	0.8684
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	8.8	0.8667
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	9.4	0.8670
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	12.5	0.8556
AT5G66631			Tetratricopeptide repeat (TPR)...		Lus10016792 [exp]	16.7	0.8310
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	17.9	0.8086
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	25.2	0.8529
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	26.7	0.8479
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	26.8	0.7904
AT3G01810			unknown protein		Lus10041590 [exp]	28.0	0.8149

Compare expression of checked genes

Lus10013142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.