Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16160 269 / 2e-85 WAKL5 wall associated kinase-like 5 (.1) AT1G79670 267 / 2e-84 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16130 267 / 3e-84 WAKL2 wall associated kinase-like 2 (.1) AT1G16120 266 / 7e-84 WAKL1 wall associated kinase-like 1 (.1) AT1G69730 267 / 8e-84 Wall-associated kinase family protein (.1) AT1G79680 265 / 2e-83 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G16150 265 / 6e-83 WAKL4 wall associated kinase-like 4 (.1) AT1G21230 251 / 2e-78 WAK5 wall associated kinase 5 (.1) AT3G25490 244 / 2e-78 Protein kinase family protein (.1) AT1G16260 251 / 3e-78 Wall-associated kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008105 [exp] 485 / 1e-169 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 417 / 4e-143 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10003063 [exp] 250 / 4e-78 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10034085 [exp] 247 / 6e-77 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10038077 [exp] 211 / 5e-63 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013385 [exp] 199 / 2e-58 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 195 / 6e-57 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 195 / 6e-57 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10032741 [exp] 191 / 1e-55 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G040756 [exp] 290 / 3e-97 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.018G148300 [exp] 296 / 1e-95 AT1G79680 511 / 7e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.018G148432 [exp] 296 / 2e-95 AT1G16260 519 / 2e-175 Wall-associated kinase family protein (.1.2) Potri.001G040500 [exp] 295 / 6e-95 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G038525 [exp] 293 / 3e-94 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039450 [exp] 292 / 7e-94 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.001G039200 [exp] 291 / 2e-93 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.018G148498 [exp] 287 / 2e-93 AT1G79680 497 / 5e-168 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.001G040628 [exp] 290 / 4e-93 AT1G16260 612 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185732 [exp] 283 / 4e-93 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013143 pacid=23164148 polypeptide=Lus10013143 locus=Lus10013143.g ID=Lus10013143.BGIv1.0 annot-version=v1.0 ATGCAAAGCTGTTCACAGAAGAAGAACTCAAAAGAGCTACAGACAACTACAACCAGAGCCGGCCACATTGTGAAGCTTCTAGGGTGCTGTCTGGAGACCG AATTTCCGTTGTTGGTGTATGAGTTCATCCCCAATGGAACGCTTTCGAGTCACATCCATGACTCGGTTAAAGACGAAGAAGAATCGAGTTCGAGTGGGAT GCTTTCGTGGGAGGACCGGTTCAGGATAGCGGGGGAAGTTACGGGAGCTGTCGCTTACATGCACTCTGCAGCTTCGTTCCCGGTGTTCCACCGTGACATA AAATCTTCGAATATACTGTTGGATGCCAAGCTGAGTGCCAAAGTTTCGGACTTTGGTACTTCCAAGTCTGGCCCTGATGACAAAACTCACCTTACCACCA TGGTTCAGGGCACATTCGGGTACTTGGATCCGGAGTACTTCCACACGAGCCAGTTCACAGACAAGAGCAATGTCTACAGCTTCGGAGTTGTGCTGGTAGA GCTTCTCACAGGGCAGAAGCCCATCTCCTTCACCAGAGGCGAAGAAGAGCGGAGCCTCGTAGCGCATTTCATTTCTGTGATGAAGGAGGAGGGCAGTCTA GTCAGGATTTTGGACCCTGTAGTTTGTAGAGAAGGTAGAGAAGCTGATTTGGGGGCCATTGCTGAGCTTGCCCTGAGATGTTTTAGGTTGAATGGGAAGA AGAGGCCTACCATGAGAGAGGTGGCTATGGAGCTCGATGGGTTGCGAAACTCGGGGCGCTCCCTTCAAGTTGACGATCAAGAAGATGAAGCATACATGGA GGATAGCTTTGACATCTCTATAGAGATGGAATCCGTGTGA
AA sequence Show only first row Show all	>Lus10013143 pacid=23164148 polypeptide=Lus10013143 locus=Lus10013143.g ID=Lus10013143.BGIv1.0 annot-version=v1.0 MQSCSQKKNSKELQTTTTRAGHIVKLLGCCLETEFPLLVYEFIPNGTLSSHIHDSVKDEEESSSSGMLSWEDRFRIAGEVTGAVAYMHSAASFPVFHRDI KSSNILLDAKLSAKVSDFGTSKSGPDDKTHLTTMVQGTFGYLDPEYFHTSQFTDKSNVYSFGVVLVELLTGQKPISFTRGEEERSLVAHFISVMKEEGSL VRILDPVVCREGREADLGAIAELALRCFRLNGKKRPTMREVAMELDGLRNSGRSLQVDDQEDEAYMEDSFDISIEMESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16160		WAKL5	wall associated kinase-like 5 ...		Lus10013143 [exp]	0	1
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	2.4	0.9440
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	6.0	0.9190
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	6.3	0.9180
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	8.1	0.9232
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	9.8	0.8885
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	10.8	0.9264
					Lus10041745 [exp]	11.2	0.9118
					Lus10002237 [exp]	13.9	0.8849
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	15.1	0.8788
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10040118 [exp]	16.2	0.9111

Compare expression of checked genes

Lus10013143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.