Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32600 437 / 2e-151 RING/U-box superfamily protein (.1) AT1G80400 387 / 8e-133 RING/U-box superfamily protein (.1) AT4G26580 151 / 4e-42 RING/U-box superfamily protein (.1.2) AT5G55970 149 / 3e-41 RING/U-box superfamily protein (.1.2) AT4G11680 134 / 4e-35 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G61180 132 / 2e-34 RING/U-box superfamily protein (.1) AT1G12760 124 / 3e-32 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G68070 118 / 6e-30 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G63170 118 / 2e-29 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 117 / 4e-29 RIE1 RING-finger protein for embryogenesis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008106 [exp] 552 / 0 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10011475 [exp] 391 / 4e-134 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10023112 [exp] 376 / 1e-127 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10033075 [exp] 173 / 2e-50 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10017750 [exp] 169 / 5e-49 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10022567 [exp] 158 / 3e-44 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 125 / 6e-32 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 121 / 2e-30 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10021801 [exp] 115 / 2e-28 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034400 [exp] 516 / 0 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 494 / 2e-174 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 155 / 1e-43 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 148 / 6e-41 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.014G075000 [exp] 134 / 2e-35 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 133 / 2e-35 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.002G155200 [exp] 130 / 8e-34 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 119 / 9e-30 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.010G106300 [exp] 111 / 3e-27 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G201500 [exp] 72 / 8e-14 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10013144 pacid=23164162 polypeptide=Lus10013144 locus=Lus10013144.g ID=Lus10013144.BGIv1.0 annot-version=v1.0 ATGGATGTTCTCTCCCAGGAGCTACATTCTGAGAATCTCGTCGCAGATAGTTGCCCGCTGCTAATGGAGAGATCAGAGACGTTTCGGAGTACTGATCACA TAATCGACGTACCAAGAAGTGTAGATTCATCGTCTTCTGAATCAACAACCTCTCAAGGTAGAGGTTCTGATGGTCTAGAAAGTTTCTCAACAGTTGGCCG GACTTCTTCAAGTACTTCAACAACCCCGATTTCTCAACCTTCCACATCTTCATCTTCATCCAATGCTCGGAATGCTAGTTTCACAAGGAGAGGGGAAAAT CGTAGACGAAGGAGTCCGTTGAACTCAGGTCTATGGATATCTGTCGAGTTAGCTCTCACGTTGAGTCAGATTATTGCTTCGATCGTCGTCTTGTGCTTGT CAAGGGACGAGCACCCTCGTACACCTTTGCTCGTGTGGATTATTGGTTATGCATCTGGATGTTTAGCAACCCTCCCACTTCTTTACTGGCGATATTATCA TCGAAATCAAGGGTTGGACCAAGATGCAGCTCAAACTCGCCAAGGCTCTACGCATATCAATGTTCCTGCTGGACCGTTTTCTCTCTCGGTGAGCCGGACT TCCGATGGAGAAGATCGTCGGCCCGCTGTAGCTGCATCTAGTGATGGTCATAATACCGCTACAGTACATCCCAGGCTCAAGGTCCTGATCGAGTACTTCA AAATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTCGTTGTGGGTAATGTGTGGATCTTCGGAGGTCACTCATCAGCAAGTGATGCTCCAAACATGTATAG ATTATGTATAGTGTTTCTTACTTTTAGCTGTATCGGATACGCCATGCCCTTCATTCTGTGCGCTACAATCTGCTGCTGCCTGCCTTGCATCATTTCCATT CTCGGGTTTCGAGAGGATCAGACACAAACCAGAGGAGCCACACCGGAGTCCATCAATGCATTACCGACTTTCAAATTCAAGTCGAAGACAGCCAGGAACG ATGGAAACCTCGGGACGAACGATGGCGGGGTTGTGGCTTCCGGGACAGAAAAGGAACGTGCCATCTCCGGTGAAGACGCGGTTTGCTGCATTTGTTTGGG GAAGTATGCGAACAACGACGAGCTGAGAGAGCTTCCGTGCGTACACTTCTTTCACAAAGATTGCGTCGATAAGTGGCTTAAGATCAATGCAACGTGTCCT CTGTGCAAAAGCGACGTCGGTGAAAGCATCACAGGTTCGCTCTCGGCCTAG
AA sequence Show only first row Show all	>Lus10013144 pacid=23164162 polypeptide=Lus10013144 locus=Lus10013144.g ID=Lus10013144.BGIv1.0 annot-version=v1.0 MDVLSQELHSENLVADSCPLLMERSETFRSTDHIIDVPRSVDSSSSESTTSQGRGSDGLESFSTVGRTSSSTSTTPISQPSTSSSSSNARNASFTRRGEN RRRRSPLNSGLWISVELALTLSQIIASIVVLCLSRDEHPRTPLLVWIIGYASGCLATLPLLYWRYYHRNQGLDQDAAQTRQGSTHINVPAGPFSLSVSRT SDGEDRRPAVAASSDGHNTATVHPRLKVLIEYFKMALDCFFAVWFVVGNVWIFGGHSSASDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISI LGFREDQTQTRGATPESINALPTFKFKSKTARNDGNLGTNDGGVVASGTEKERAISGEDAVCCICLGKYANNDELRELPCVHFFHKDCVDKWLKINATCP LCKSDVGESITGSLSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32600			RING/U-box superfamily protein...		Lus10013144 [exp]	0	1
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Lus10037350 [exp]	9.8	0.6172
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10005021 [exp]	12.2	0.5860
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043264 [exp]	14.3	0.6007
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	20.9	0.6131
AT4G33940			RING/U-box superfamily protein...		Lus10027921 [exp]	21.8	0.5779
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	42.5	0.5564
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	50.4	0.5568
AT4G12010			Disease resistance protein (TI...		Lus10018021 [exp]	56.6	0.5574
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	84.4	0.5018
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	98.7	0.4870

Compare expression of checked genes

Lus10013144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.