Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11430 469 / 9e-151 SPOC domain / Transcription elongation factor S-II protein (.1) AT5G25520 465 / 1e-147 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G25640 444 / 1e-142 SPOC domain / Transcription elongation factor S-II protein (.1) AT3G29639 84 / 2e-18 unknown protein AT2G38560 58 / 1e-08 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT4G18720 56 / 4e-08 Transcription factor IIS protein (.1) AT2G42730 57 / 5e-08 F-box family protein (.1.2) AT5G42325 47 / 3e-05 Transcription factor IIS protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008108 [exp] 1544 / 0 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10025131 [exp] 64 / 4e-10 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 61 / 2e-09 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 59 / 1e-08 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 59 / 1e-08 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 50 / 5e-06 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029016 [exp] 45 / 7e-05 AT2G38560 131 / 1e-36 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246800 [exp] 719 / 0 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.018G034500 [exp] 699 / 0 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.T125307 [exp] 135 / 2e-32 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1) Potri.018G125500 [exp] 135 / 2e-32 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1) Potri.016G138100 [exp] 60 / 5e-09 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G109300 [exp] 60 / 5e-09 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [flax] [poplar] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0616 [flax] [poplar] SPOC PF07744 [flax] [poplar] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Lus10013146 pacid=23164191 polypeptide=Lus10013146 locus=Lus10013146.g ID=Lus10013146.BGIv1.0 annot-version=v1.0 ATGAGTCAACTGGAACACGTTTCAGAGAAATTGGACTCTTCTTCCCAAATGGGGTTTGGTTTGGATATGGGATTACATGATCCAGCAATGCAACTGGTAT CTTCCCCCAGTACACATATGGGGGTGATGGGTTCAGTTTCCAGCAACGCACTATCACAGCCGGCATCAATGCAAATAATGGAGCCTGTTATTTCTCCTCG TGTTCTGCAGCAATCATCAATGTCTAACATCCAGAAGAGAAATATCGATCCATTTTCCTATAATATGACATCGGAGAACTTTTTGATGCCTAATAATCAA TTCAGTGGCGTTGGGTCCTCGTTGCAGGATCAACAGGCTGCAACAAACAAGAGAAAGGCACCAATGGAAGGTGCATCTCTGTACCCGGTGCCTCAGAGAT ATACAGCTCCAAAGCGGTTTTCTCTCAATGAACATAGGCCATGGCTTCAGCCAACGGCAGTAACAAGTAAATTACCTGTCCAGGTGCAGTCTGTATTGCT TCGGCCACAAGGACCTCCTAAGAAACCGGCTCCTGTGAAAACCGGTACACAATATATGCCTTTGAAAAAAAGTCAAACTGTTCAAATGCAGCCGTCCCAG AAAGTGAAGAACGAGTCGTTTGATTCTGTTAGGTCCAAGATGAGAGAGTCATTAGCTGGTGCTTTAGCTCTTGTACAAGATAAGAGCCCAGATGGTCCGA AAGACTCCAAGAGTACTGCTACAGGTGCTTCGGAGGAACCTTCTAGTGCTAATGATAACAGTGGTTCAGAACTGATGGATTCATTGCCTGGAGCTGATTC GGCTGGAAATGCAGTCTTAACACACAATCCGACGAACGATGTACAAGGAGAGCAACCTGTGGAGACTGTTAGTATTGATGATATTCCTTTTAGTGAGAAC TTTTATGTGAAAGATGAACTTCTTCAGGGTAATGGTCTGTCATGGATTATAGACTCTGAGATAGAATTAATAGATGAAAGTGGCATCCGCAAGAAGCAGT TGGACCAAGATGATGTCCCTGCTGTAGAGAAGAAGCAACTTCTGAACCCTGAAATTTTGGCAACGAAAATTGAAGCTGAACTATTCAAGTTATTTCGAGG GGTGAACAAGAAATACAAAGAAAAAGGAAGGTCTCTTCTGTTCAATTTAAAGGATCGTAATAACCCGGAGTTGAGAGAAAAAGTCATGCAGGGAGACATA TGTCCCGAGAGGCTGTGTTCCATGACTGCGGAGGAGCTTGCTTCGAAGGAGCTCTCAGAATGGCGAGTGGCAAAAGCGGAGGAGTTCGCCCAAATGGTTG TTTTGCCAGATTCAGATGTGGATATCAGGAAACTCGTGAGGAAAACACACAAAGGCGAGTTCCAGGTTGAGGACGACCAAGATAGAGATATTGTATCGGC AGAGGTTGCCATCGGGACAAATTCACTCAATTTGCCACGACAACCCAAACCGAAACGAAAAGAATCTTCTCCATCAGAGAGTGGAAACGCAAAAAACACA GAAAATTCGGAATACACCGTCACAATTCCTTCAACTGAAGCAGGTGACTTGATGCAAGGTCTCATGGTGGATGATGAGCTGAAGGATGCCGAGTTTCTTC CCCCGATTGTTTCCCTCGATGAGTTTATGGAATCTCTTAACAACGAGCCCCCATTTGAACCCTTACCTGAGGATGCTGCTGATAAAGCAACAACTCCAGC TTCTGTAAAGAATGATTCGAAGGTTGACTCAGAAAACAAGTCTCCTGAAAATCTCGAAAAAGCTGGAAGTGAGGGACAAAATGCCAAGTCCGTTGCTGCC GAGCAATCTAGCAAGGAGAATGACGAGATATCGAACACCACAACTGCTGTTGATATCATTAAAGGTGAACGTGCCTGGGAAGGGTTACTGCAGCTCAACG TCTCTGCCACTGTTCCAGTTGTTGGCATCTTTAAAAGCGGGGAGAAGACACAGTCCAAGGACTGGCCTAGCTCGATCGAGATTAAGGGCCGAGTGAGACT GGAAGCATTTGAGAAGTTCTTGCAGGCGCTTCCGATGTCCCGAAGCCGTGCTGTCATGGTGGTGCATTTTGTGTACAAGGAAGGGTCAGGCGAGAGCGAA ATGGCAAACATTGTCGAGGCGTCGGAGTCGTATGTCTCAGATGAGAGAGTTGGGTTCGGCGAGCCAGCTCCAGGAGTGGAGCTCTACTTGTGCCCTCCTA ACTCAAGAACATGCGACTTGCTAAGCAAAGTCCTGCCGCAGGATCAAATGGACGGCCTTAAATTGATTGAAAATGGTCTAATTGGTGCTATTGTATGGAG AAAACCTCAAATAATATCACCATCGAACCATAAGCACAAAGACTCCTCCAAAAAGCACTCGTCTTCCTCCTCTAGTAGGAGGCACCATCATAGTGATGTC ATCGCTCGAAATGTGAAACACCATTCCAGGCCTCAACCCGGTATGGCCGCAGTTGGAAATGATGACGAGGATGATGATGTGCCTCCTGGGTTCGGTCCGC CTGCGGGTGGACCGAACCGGGACGAGGATGACTTGCCTGAGTTTAATTTCTCCAGTAATAAGTCAGCAGCAACGAATAATAGGCCGGTTTTCCCTACCGG CCGTGTAGACCAAATGAGAGAGCTTATACATAGATATGGACAGCCGGATCGTGATGTAAAAATTGTCGGTGTTTCTGTACAGCCGTGGAAAGACGATGAT GACGACGATGATATGCCGGAATGGCGGCCTGAAGACTCACAACGCCATGTCGCGCCTCCTAGCAACTTGCGCAATCAGCAACTGCCCAGTTTGCGACCCC ACATGGTCCAGCACCTACCGCCGCCTCCTCCTCTGCCAGGTTGGCCGCCACATCAGCAGCAAGGTGGCTGGACTTCCCTGGCTGCTCCGAATCTTCAGCA GCAGCAGCAACTGAACGGCGAAAGCCAGCTTTATGGACAGCAAGGCCCGACCTGGCAGACGAGAGATGCCCCGAAAAGTAGAGGCTTTTAG
AA sequence Show only first row Show all	>Lus10013146 pacid=23164191 polypeptide=Lus10013146 locus=Lus10013146.g ID=Lus10013146.BGIv1.0 annot-version=v1.0 MSQLEHVSEKLDSSSQMGFGLDMGLHDPAMQLVSSPSTHMGVMGSVSSNALSQPASMQIMEPVISPRVLQQSSMSNIQKRNIDPFSYNMTSENFLMPNNQ FSGVGSSLQDQQAATNKRKAPMEGASLYPVPQRYTAPKRFSLNEHRPWLQPTAVTSKLPVQVQSVLLRPQGPPKKPAPVKTGTQYMPLKKSQTVQMQPSQ KVKNESFDSVRSKMRESLAGALALVQDKSPDGPKDSKSTATGASEEPSSANDNSGSELMDSLPGADSAGNAVLTHNPTNDVQGEQPVETVSIDDIPFSEN FYVKDELLQGNGLSWIIDSEIELIDESGIRKKQLDQDDVPAVEKKQLLNPEILATKIEAELFKLFRGVNKKYKEKGRSLLFNLKDRNNPELREKVMQGDI CPERLCSMTAEELASKELSEWRVAKAEEFAQMVVLPDSDVDIRKLVRKTHKGEFQVEDDQDRDIVSAEVAIGTNSLNLPRQPKPKRKESSPSESGNAKNT ENSEYTVTIPSTEAGDLMQGLMVDDELKDAEFLPPIVSLDEFMESLNNEPPFEPLPEDAADKATTPASVKNDSKVDSENKSPENLEKAGSEGQNAKSVAA EQSSKENDEISNTTTAVDIIKGERAWEGLLQLNVSATVPVVGIFKSGEKTQSKDWPSSIEIKGRVRLEAFEKFLQALPMSRSRAVMVVHFVYKEGSGESE MANIVEASESYVSDERVGFGEPAPGVELYLCPPNSRTCDLLSKVLPQDQMDGLKLIENGLIGAIVWRKPQIISPSNHKHKDSSKKHSSSSSSRRHHHSDV IARNVKHHSRPQPGMAAVGNDDEDDDVPPGFGPPAGGPNRDEDDLPEFNFSSNKSAATNNRPVFPTGRVDQMRELIHRYGQPDRDVKIVGVSVQPWKDDD DDDDMPEWRPEDSQRHVAPPSNLRNQQLPSLRPHMVQHLPPPPPLPGWPPHQQQGGWTSLAAPNLQQQQQLNGESQLYGQQGPTWQTRDAPKSRGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11430			SPOC domain / Transcription el...		Lus10013146 [exp]	0	1
AT5G11430			SPOC domain / Transcription el...		Lus10008108 [exp]	1.0	0.9410
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	1.4	0.9356
AT5G62620			Galactosyltransferase family p...		Lus10036685 [exp]	4.0	0.8777
AT3G58050			unknown protein		Lus10029299 [exp]	6.5	0.8609
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	7.0	0.8600
AT5G66820			unknown protein		Lus10002968 [exp]	8.2	0.8374
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	9.0	0.8925
AT5G07900			Mitochondrial transcription te...		Lus10040462 [exp]	13.0	0.7956
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	13.1	0.8152
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	13.4	0.8543

Compare expression of checked genes

Lus10013146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.