Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 463 / 4e-161 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT1G72540 460 / 3e-160 Protein kinase superfamily protein (.1) AT2G26290 444 / 2e-154 ARSK1 root-specific kinase 1 (.1) AT5G35580 440 / 1e-151 Protein kinase superfamily protein (.1) AT5G01020 387 / 3e-132 Protein kinase superfamily protein (.1) AT1G61590 386 / 1e-131 Protein kinase superfamily protein (.1) AT3G28690 356 / 2e-120 Protein kinase superfamily protein (.1.2.3) AT5G15080 359 / 6e-120 Protein kinase superfamily protein (.1) AT3G01300 357 / 4e-119 Protein kinase superfamily protein (.1) AT5G56460 351 / 6e-118 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008110 [exp] 811 / 0 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10034897 [exp] 469 / 7e-163 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 466 / 1e-161 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 446 / 4e-154 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 446 / 4e-154 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 390 / 7e-134 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 390 / 6e-133 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 385 / 2e-130 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 365 / 4e-122 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066300 [exp] 558 / 0 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 557 / 0 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 486 / 2e-170 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 484 / 7e-170 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 400 / 3e-137 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 397 / 6e-136 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 397 / 2e-135 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 395 / 4e-135 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.003G222600 [exp] 372 / 2e-126 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 367 / 7e-125 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10013148 pacid=23164187 polypeptide=Lus10013148 locus=Lus10013148.g ID=Lus10013148.BGIv1.0 annot-version=v1.0 ATGGTTGTCTTCAAAGGTTCCAAATGGAACCCAAACCTCCTCCTAAGCTGCTTCAAGCCCAGAGATTCATCATCATCACCATCTGATCATCACGATCCGA AATCTACGAAGAACAATCACAAGGTATGTTCAAGAAGAATCTCACTGTTGGACTGGAGCAACCCGGAATCTCAGCTCTCAGTGATGAGCGATCTCTCAAA CCCTGTCTTCAACCTCCACATCTTCACCCTCAAGGAGCTTCAAAAAGTCACCAGCAACTTTTCGAGGAGCAATTACCTCGGAGAAGGCGGGTTCGGAGCA GTGTTCAAAGGGTTCGTGGATGGGAAGATCCGGCCCGGTTTGAATGCTCAGCCTGTTGCTGTCAAAGTTCTTGACTTGGATGGTTCCCAGGGCCACAGAG AATGGCTGGCAGAGGTGATATTCCTAGGACAACTGAAGCATGAACATCTGGTAAACTTGATTGGACACTGCTGTGAGAATGAACAGAGGCTTCTGGTTTA TGAGTACTTGGAGCGTGGGAATCTTGAGCATCTCCTTTTCAGAAGGTATACAGCTTCACTTCCTTGGCTAACAAGGCTGAAGATTGCTGCAGGAGCAGCC AAAGGGCTTGCTTTCCTTCATGAAGAGGAGAAACCGGTCATCTACCGCGATTTCAAGACTTCCAACATCTTGCTCGACTCGGACTACAATGCAAAGTTGT CGGATTTCGGGCTGGCAACAGACGGGCCAGAAGGGGACGAAACCCACGTTACGACTCAAGTGATGGGCACAGAGGGCTATGCAGCGCCCGAGTACATATC AACAGGCCATCTCTCATCCATGAGCGATGTGTTCAGCTTCGGCGTGGTGCTACTAGAGCTGCTAACCGGTCGGAGGTCAGTGGACAAAACCCGGCCGCCT AGAGAACAAGTGCTTGTGAAATGGGCAAGACCATTCCTCAAGGACCACCAGAGGCTTGACCAGATCATGGACCCGAGGCTAGAAGGGCAGTACTCGGTCG AAGGCGCGAGGAAGGCTGCCGCACTGGCTAGTCAATGCTTGAGCCACCATGCCAAGTGTAGGCCAAGTATGAGCAAAGTTGTGAAGACCTTGGAGGGCTT GATGGAGTTGCAAGATGACATTCAAGTTGGTTTCTTTGTGTACATTGTCCCCGTGGAGTGTAAACCCGAGAAAGGTACCGTTGTGATGAAGTGCTCGGAG CAGAGCGATCGGAATGCTAATAAGGAAGAATCAAAGCAAGAGAAAGTTAGAGGGAGGAGGAGGAAGAAGAAGGGTACTAAAGCTGTAGTTCATTCTGATA CAGATTTGTACAAAAGATTAGGGACTAGTTTGTACTCTCCTAAGACATTACAAAGGTGA
AA sequence Show only first row Show all	>Lus10013148 pacid=23164187 polypeptide=Lus10013148 locus=Lus10013148.g ID=Lus10013148.BGIv1.0 annot-version=v1.0 MVVFKGSKWNPNLLLSCFKPRDSSSSPSDHHDPKSTKNNHKVCSRRISLLDWSNPESQLSVMSDLSNPVFNLHIFTLKELQKVTSNFSRSNYLGEGGFGA VFKGFVDGKIRPGLNAQPVAVKVLDLDGSQGHREWLAEVIFLGQLKHEHLVNLIGHCCENEQRLLVYEYLERGNLEHLLFRRYTASLPWLTRLKIAAGAA KGLAFLHEEEKPVIYRDFKTSNILLDSDYNAKLSDFGLATDGPEGDETHVTTQVMGTEGYAAPEYISTGHLSSMSDVFSFGVVLLELLTGRRSVDKTRPP REQVLVKWARPFLKDHQRLDQIMDPRLEGQYSVEGARKAAALASQCLSHHAKCRPSMSKVVKTLEGLMELQDDIQVGFFVYIVPVECKPEKGTVVMKCSE QSDRNANKEESKQEKVRGRRRKKKGTKAVVHSDTDLYKRLGTSLYSPKTLQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10013148 [exp]	0	1
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	4.5	0.8911
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10042940 [exp]	9.8	0.8345
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	13.7	0.8767
AT2G21100			Disease resistance-responsive ...		Lus10025063 [exp]	15.0	0.8691
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	15.5	0.8890
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10040475 [exp]	19.3	0.7954
AT2G43630			unknown protein		Lus10013892 [exp]	19.3	0.8470
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	22.9	0.8353
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	23.0	0.8782
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10017595 [exp]	26.9	0.8619

Compare expression of checked genes

Lus10013148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.