Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56690 937 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 920 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 682 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G46460 483 / 7e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 479 / 4e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 471 / 3e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 458 / 5e-151 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G29760 456 / 5e-151 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35030 445 / 5e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 446 / 8e-147 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013540 [exp] 635 / 0 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 493 / 1e-164 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010998 [exp] 481 / 6e-161 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 481 / 1e-154 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004892 [exp] 460 / 1e-150 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 452 / 2e-149 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 461 / 7e-147 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 440 / 2e-143 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 436 / 8e-143 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G005400 [exp] 1070 / 0 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 1068 / 0 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 659 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 481 / 2e-161 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G038400 [exp] 475 / 1e-159 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G354400 [exp] 472 / 5e-158 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 474 / 3e-157 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G136200 [exp] 468 / 2e-155 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 464 / 2e-153 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 462 / 4e-153 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013149 pacid=23164158 polypeptide=Lus10013149 locus=Lus10013149.g ID=Lus10013149.BGIv1.0 annot-version=v1.0 ATGTGGGTTCGCTTCATACTTCGTAGACATTATACTGCAGCTCTCACTCCTCCGGTAAATTCGAATTCCCAGATATCCCATTTCGCCCGTACATCTCAAA TGGAAAGAGCCCGGCAGGTCTTCGATCAGCTCCGCAACAAGACCGTCGTGTCATGGAATGCAATCGTGGCTGGTTACTTCCACAACAACCAACCCAAGGA AGCCCGCCAGCTATTCGATCAAATGCCTGACAGAAACATAGTCTCTTGGAACGGCTTGATTTCAGGCTATATTAAGAATGGGATGATTCTAGAGGCTAGG AAGGCCTTTGATAGAATGCCTGAAAGAAATGTGATTTCTTGGACTGCTATGCTCAGGGGTTATGTGCAAGAGGGCATGATTAAGGAAGCAGAAGCTTTGT TTGCCGCAATGCCTGATAAGAATGTCGTCTCGTGGACGGTTATGATCGGTGGCTTGATTGAGGATGGACGTGTTGATGAGGCTGCGAAGATGTACGACGC AATGCCGGTTAAGGATGTAGTTGCTAGAACTAATATGATGGGAGGGTTGTGTGCTGAAGGAAGATTAAAGGATGCACGGGAGATGTTCGATGAAATGCCT GAAAGAAATGTGATTGCTTGGACAACTATGATTAATGGGTACGCTATGCATAATAGAGTTGATGTAGCTAGGAAGTTGTTTGAAGTAATGCCGGGTAAAA ATGAGGTGACTTGGACAGCAATGCTGATGGGATATACGAGGGCCGGACGGATTAACGAAGCTGCGGAGCTTTTTGATTCGATGCCAGACCGGTCGGTTCC TGCTTGTAACGAAATGATTATGGGATTTGGACGGGACGGTGATTTGGCTAAAGCGAGGGAGGTATTCGATCAAATGAAGGAGAAGGATGATGCGTCATGG AGTTCAATGATCAAGGTTTACGAGAGGCAAGGATTCGAATTGGAAGCACTCCGTCTGTTTAGGTTAATGCAACTAAGAGGAGGAATGAGAGCGAATTTTC CATCGATAATTAGCGTTCTCTCTGTTTGCGGTAGTCTGGCAATTCTAGATCACGGTCGAGAGGTCCATGCGAAGTTGATTCGATCTTTGTTCGACTTTGA TGTGTACGTATGCTCAGTTCTGATCACGATGTATATAAAGTGCGGCGATCTTGCTCATGGCAAACGAGTTTTTGACCGGTTTAAATCCAAGGATGCTGTT ATGTGGAACTCTATTATAACTGGTTACGCACAGCATGGACTTGGGAAAGAAGCTTTACAGGTGTTCTATGATATGGTAAGGTCAAAAGTAGCTCCTGATG AAGTTACCTTCATTGGTGTTCTCTCAGCATGTAGCTACACAGGAAGGGTGAAAGAAGGGCTTGAACTATTCGAGTCGATGAAATCGAAACATCTAGTGGT TCCCAAAACCGAACACTATTCTTGCGTGGTTGATCTACTAGGTCGGGCAGGAAAGCTGACAGAGGCGATGGACTTAATTCGAAACATGTCGGTGGAACCC GATGCTGTTGTTTGGGGTGCTTTACTAGGAGCTTGCAGAATTCATAATAGACTGGATATGGCTGAAGTTGCAGCAAAGAAGCTTCTACTGCTGGAACCAG AGAATTCCGGACATTACATCTTACTCTCGAATATTTATTCATCGCAAGGTAAATGGAAGGACGTTGCATCGTTGAGGAATAACATGAGATTACAGACACT GTATAAATCGCCGGGTTGTAGTTGGATCCAGGTGGAGAAAGAAGTGCATATGTTCACTGGAGGAGATAGAGATTGCATAAATTCTCATCCTGACCATGAC GCTATTTTGGCGAAGTTGGAGGAGTTGGATAGGCTTATAAGAGAGGCTGGATATTGTGCTGACGGTAGCTTTGTGCTGCATGATGTTGAGGAAGAGGAGA AGGTTCATAGCTTACGGTATCACAGCGAGAAATTGGCTGTGGCGTATGGAATCCTGAAGGCGCCGAAAGGTACAACTCTTAGGATCATGAAGAATCTCAG GGTTTGTGGCGATTGCCATGCTGCGATTAAGTTGATTGCAAAAGTTACGGGGCGAGAGATTGTGTTAAGGGATGCTAATCGTTTCCATTGCTTCAAAGAT GGTTCGTGCTCTTGCGGCAACTACTGGTAG
AA sequence Show only first row Show all	>Lus10013149 pacid=23164158 polypeptide=Lus10013149 locus=Lus10013149.g ID=Lus10013149.BGIv1.0 annot-version=v1.0 MWVRFILRRHYTAALTPPVNSNSQISHFARTSQMERARQVFDQLRNKTVVSWNAIVAGYFHNNQPKEARQLFDQMPDRNIVSWNGLISGYIKNGMILEAR KAFDRMPERNVISWTAMLRGYVQEGMIKEAEALFAAMPDKNVVSWTVMIGGLIEDGRVDEAAKMYDAMPVKDVVARTNMMGGLCAEGRLKDAREMFDEMP ERNVIAWTTMINGYAMHNRVDVARKLFEVMPGKNEVTWTAMLMGYTRAGRINEAAELFDSMPDRSVPACNEMIMGFGRDGDLAKAREVFDQMKEKDDASW SSMIKVYERQGFELEALRLFRLMQLRGGMRANFPSIISVLSVCGSLAILDHGREVHAKLIRSLFDFDVYVCSVLITMYIKCGDLAHGKRVFDRFKSKDAV MWNSIITGYAQHGLGKEALQVFYDMVRSKVAPDEVTFIGVLSACSYTGRVKEGLELFESMKSKHLVVPKTEHYSCVVDLLGRAGKLTEAMDLIRNMSVEP DAVVWGALLGACRIHNRLDMAEVAAKKLLLLEPENSGHYILLSNIYSSQGKWKDVASLRNNMRLQTLYKSPGCSWIQVEKEVHMFTGGDRDCINSHPDHD AILAKLEELDRLIREAGYCADGSFVLHDVEEEEKVHSLRYHSEKLAVAYGILKAPKGTTLRIMKNLRVCGDCHAAIKLIAKVTGREIVLRDANRFHCFKD GSCSCGNYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	0	1
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	2.2	0.8982
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	2.8	0.8950
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036839 [exp]	3.9	0.8924
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	4.0	0.8856
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	5.5	0.8851
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	6.0	0.8798
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	6.5	0.8824
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	10.0	0.8773
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	10.6	0.8689
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	13.2	0.8825

Compare expression of checked genes

Lus10013149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.