Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 371 / 1e-123 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G48310 351 / 5e-116 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT1G01280 350 / 2e-115 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT3G26330 347 / 4e-114 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G06900 347 / 4e-114 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT3G48280 337 / 1e-110 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G57260 337 / 1e-110 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT4G22710 337 / 5e-110 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT3G48270 336 / 5e-110 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26320 335 / 2e-109 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008112 [exp] 942 / 0 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 590 / 0 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 399 / 4e-134 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10019457 [exp] 390 / 6e-131 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 376 / 2e-125 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 368 / 5e-122 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021620 [exp] 357 / 7e-118 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021158 [exp] 349 / 8e-115 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10041951 [exp] 348 / 2e-114 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066400 [exp] 763 / 0 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 758 / 0 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 689 / 0 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 686 / 0 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 686 / 0 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 636 / 0 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 636 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 634 / 0 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 402 / 9e-136 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 402 / 9e-135 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10013150 pacid=23164185 polypeptide=Lus10013150 locus=Lus10013150.g ID=Lus10013150.BGIv1.0 annot-version=v1.0 ATGAATCCCATCACTCCCTCAAGCACCACCACTCTAGCCACCGCATGGGCAATCACCGTCGCCGTCATCCTCCTTGCCGGTTGGCTCCGCCACCGTCGTA ACCCCAACCAGCCACCCGGCCCAACACCCTGGCCCATTATCGGCAACCTCAACTTAATAGGCCCACTACCCCACCGCTCCCTCCACTCCCTCTCCGTCAA ATACGGGCCCATCATGCAGCTCCGATTCGGGTCCCACCCGGTCGTCGTCGGATCCTCCGTCGACATGGCCAAATCCATCCTCAAGACCCACGACCTCGCC TTCGCCGGCCGCCCGGAGATTGCCGCCGGAAAGTACACCACCTACGAATACTCCGACATCACCTGGTCCCAGTACGGCCCTTACTGGCGGCAGGCGAGGA AGATGTGCTTAACCGAGCTCTTCAGCGCCAAACGGGTCGGGTCGTATGAATACATCCGGCGGGAGGAGATGAAATGGGTCGTCAACAACCTTTTCGGGTC GTGCGGAAACCCGATTAATTTGAAAGACCATTTGTCCGATCTGAGCCTCAATGTAATCAGCCGGATGGTTCTGGGCAAGAAGTACACCAATTCCGGCAAC GGAGAGAATGAAATTGTGACGCCGGTGGAGTTTAAGGAGATGCTCGACGAGCTTTTCTTGCTGAACGGCGTTTTGGATATCGGAGATTCGATCCCGTGGC TGGCGGGTCTGGATCTGCAAGGGTATATAAAGAGGATGAAGGCTGTGGCGAAGAAATTCGATGGGTTTCTCGAGAGGGTTTTGGATGAGCATAATTCGAG GAGGGGGGAGAAGGATTTTGTGGCGAAGGATATGGTGGATGTTTTGTTGGAGCTCGCCGCCGATCCCGATTTGGAAGTCAAGCTTGATCGCCGGGGAGTT AAGGCATTTACTCAGGACATGATTGCCGGTGGTACAGAGAGTTCGGCGGTGACGGTAGAATGGGGGATATCAGAACTGTTAAAGAGGCCGGAGATATTTG ACAAAGCAACCGAGGAGTTAGACAGAGTAGTGGGGAAAGAGCGTTGGGTCGAAGAGAAAGACGTGGCGAATCTGCCTTACATCAACGCGATCGTAAAAGA GACAATGAGGCTACACCCTGTAGCGCCGTTGTTGGTTCCGAGGTTGGCCCGCGAGGATGTCGACATAGCAGGCTACCGGGTGGCTAAGGGGACAAGAATA TTGGTTAACACGTGGACCATAGGGAGGGATCCAACGATTTGGGATGATCCCGAGGAGTTTAAGCCGGAGAGGTTTATAGGAAAGGAGATTGATGTGAAGG GTCATGACTATGAGCTGTTACCGTTCGGTGCTGGAAGGAGGATGTGTCCCGGATATCCGTTGGGGATTAAGGTGATTCAAGCTAGCTTGGCTAATCTTGT GCATGGGTTCAAGTGGGGATTGCCTAGTGGGATGAAGAAAGAGGATTTGAATATGGAGGAGATTTATGGACTCTCTACTCCTAAGAAGTTCCCACTTGTT GCCGTTGCTCAACCTAGGCTTCCACTTCATCTCTATGCCAACTGA
AA sequence Show only first row Show all	>Lus10013150 pacid=23164185 polypeptide=Lus10013150 locus=Lus10013150.g ID=Lus10013150.BGIv1.0 annot-version=v1.0 MNPITPSSTTTLATAWAITVAVILLAGWLRHRRNPNQPPGPTPWPIIGNLNLIGPLPHRSLHSLSVKYGPIMQLRFGSHPVVVGSSVDMAKSILKTHDLA FAGRPEIAAGKYTTYEYSDITWSQYGPYWRQARKMCLTELFSAKRVGSYEYIRREEMKWVVNNLFGSCGNPINLKDHLSDLSLNVISRMVLGKKYTNSGN GENEIVTPVEFKEMLDELFLLNGVLDIGDSIPWLAGLDLQGYIKRMKAVAKKFDGFLERVLDEHNSRRGEKDFVAKDMVDVLLELAADPDLEVKLDRRGV KAFTQDMIAGGTESSAVTVEWGISELLKRPEIFDKATEELDRVVGKERWVEEKDVANLPYINAIVKETMRLHPVAPLLVPRLAREDVDIAGYRVAKGTRI LVNTWTIGRDPTIWDDPEEFKPERFIGKEIDVKGHDYELLPFGAGRRMCPGYPLGIKVIQASLANLVHGFKWGLPSGMKKEDLNMEEIYGLSTPKKFPLV AVAQPRLPLHLYAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10013150 [exp]	0	1
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	2.8	0.7987
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	7.7	0.7829
AT4G36160	NAC	ANAC076, VND2	VASCULAR-RELATED NAC-DOMAIN 2,...		Lus10015312 [exp]	10.5	0.8006
AT1G31130			unknown protein		Lus10018940 [exp]	11.4	0.7789
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	15.1	0.7862
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	19.2	0.7253
AT2G16900			Arabidopsis phospholipase-like...		Lus10012164 [exp]	20.8	0.7666
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	25.2	0.7737
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10036484 [exp]	26.8	0.7598
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025784 [exp]	29.3	0.7203

Compare expression of checked genes

Lus10013150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.