Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72520 1346 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 1343 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G67560 858 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 756 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G55020 716 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 711 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008113 [exp] 1741 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 1524 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10006429 [exp] 897 / 0 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031810 [exp] 797 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 776 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 774 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 773 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 769 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 736 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G167700 [exp] 1426 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.003G067600 [exp] 1019 / 0 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.010G057100 [exp] 966 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 959 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G015500 [exp] 847 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 844 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 842 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 818 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 781 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.005G032400 [exp] 736 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10013151 pacid=23164160 polypeptide=Lus10013151 locus=Lus10013151.g ID=Lus10013151.BGIv1.0 annot-version=v1.0 ATGGCTTTGACCAGAGAAATCACCGGCGGCGCTTCCTTATTCCCCCGGCCGTCATTTCTTCCTTCCACCAATCTGCTCAGCACCAGACCAGTTTTTCTCC CTATGAGAAGAAGACCCATTGTCGTAGCAGCAATTAGCGAGGATTTGATCCAGAAGGTCACAAATTTCGTCTCATCGGAAAATCCGGCGCCGCCGCCGCC GCCCCGGGCGGCGCTCACCGTCAGAGCTGTGGTGACGGTAAAAAACAAGAATAAAGAAGATTTCAAAGAGTCCCTTGTGAAAAAGATCGATGCTTTCACT GATAAGATCGGCAGAAACGTCGTATTGGAGCTGATTAGTACTGAGCTCGATCCAAAAACTAATGCGCCAAAGAGGAGCAAAGGAGCTGTGTTGAAGGACT GGTCAAAGAAGTCGAATGTTAAAGCTGAGAGGGTTCATTACTCAGCTGATTTTACAGTGGATTCAGATTTTGGTGTTGTTGGAGCAATTACTGTGAGTAA TAAGCATCAGAGGGAGTTTTTCTTGGAGAGTATTACTCTTGAAGGTTTTGCTTCTGGTCCAGTTCATTTCCCTTGCAATTCCTGGGTTCAATCCACCAAA CACCATCCTGCTAAGAGGATCTTCTTCTCCAATGAGCCATATCTGCCAAGTGAGACTCCATCTGGACTTAGAGCATTGAGAGAAAGAGAGCTTAAAGATC TAAGAGGAGATGGAACTGGAGTTAGAAAGTTATCTGATAGGGTCTATGACTATGATATCTACAATGATCTTGGGAATCCAGACAAGGGAATCGACTATGC TAGGCCGGCACTTGGTGGTGCGAAAATCCCGTATCCTAGAAGGTGTCGTACTGGCCGCGAACCAACATATACTGATTCGAATGCTGAGAGCCGTGTGGAG AAGCCGACGCCAATGTACGTGCCTAGAGACGAACAATTCGAGGAGTCCAAGAAGAAGTCTTTCTCATATGGGAGGCTCAAGGCGGTTCTGCACACTCTCG TGCCGATGCTGAAGGCCAGCATTACTGCTCAGAATCGCGATTTTAGTGCTTTCGCGGACATTGATATCCTCTACAAAGAAGGTATCCTCCTTAAAGTCGG GATCCAGGACGAAATCTGGAAAAAGCTTCCTTTGCCAAAGGCGGTTTACAGTTTCACTGAGTCCAGTGAAGGACTTCTCAGATATGACACTCCCAAGATC CTTTCCAAGGACAAGTTTGCCTGGTTGAGAGACGACGAATTCGCTCGCCAAGCCATTGCCGGTGTTAATCCGATTAACATTGAACGTCTCAAGGAGTTCC CACCTAAGAGCAACCTGGATCCCGAAATATACGGTACACTCGAATCTGCACTTACGGAAGAACATCTCTTGGGACAAATTGATGGCATGTCAGTTCAACA GGCTTTGGAGGAGAACAAGCTGTTCATAGTGGATTACCATGATGCATATCTGCCATTTCTGGATAAGATCAATGCCCTTGATGGAAGGAACACATACGCA ACTCGAACCGTGTTCTTTTTAACCTCTCAGGGGACACTTAAACCGATAGCGATCGAGCTCAGTCTTTCACCTGGAGGGCCACCGTCGAGATCCAAACGAG TGATTACTCCTCCGGTTGACGCGACCAGCTACTGGATTTGGCAATTGGCAAAGTCTCATGTTTGCTCCAATGATGCTGGTGTTCATCAACTGGTTAATCA CTGGTTGCGAACGCATGCCTGTATGGAGCCGTTCATACTGGCAGCGCACAGGCAATTGAGTGCGATGCACCCAATTTTTAAGCTCTTGGATCCTCACATG AGATATACACTCGAGATCAACGCTCTCGCTCGCCAGAGCTTGATCAATGCCGATGGTGTTATCGAGTCGTGCTTCACTCCTGGCCGGTACTGCTCGGAGA TTAGCGCTGCAGCGTATAGGAACTTTTGGCGGTTCGACAAGGAAGGCCTCCCTGCTGATCTCATCCGAAGGGGGATGGCAGTACCAGATCCAACAGAACC ACATGGCTTGAAGCTTCTACTTGAAGACTACCCTTATGCTCAAGACGGGCTGCTGATCTGGTCCGCCATCGAAAACTGGGTCCGAACTTACGTAAACCAT TACTACCCAAACCGAACAACAGTCCAACGTGACTCGGAGCTACAAGCCTGGTATTCCGAGTCCATCAACGTAGGACACGCTGATCTGCGCCACGCAGATT GGTGGCCTGCATTGGAAACCAGCGAGGATCTTATCTCGATCCTCACAACAATCATCTGGATCGCATCTGCACAACATGCTGCGCTCAACTTCGGACAGTA CCCTTACGGAGGCTACGTTCCGAACCGACCGCCCTTGATGAGACGGCACATACCGGACCAAAACGACCCCGAGTACGAAAACTTCCAAGCCGACCCTCAG AGGTTTTTCCTATCAGCATTGCCGAGTTTGTTACAGGCGACGAAGTTTATGGCGGTGGTGGACACGCTGTCGACACACTCGCCCGATGAGGAGTATTTAG GGGAGAGACAGCAGCCGTCGGTGTGGTCAGGGGATGCTGAGGTGGTGGAGGCGTTTTACGAGTTTTCGGCTGAGATCCAGCGGATAGAGAAGGAGATCGA GAGGAGGAATAACGATCCGGGGTTGAAGAGTAGGTGCGGTGCGGGCGTGTTGCCTTACGAGCTGCTGGCTCCGAGCTCAGAGCCCGGGGTTACTTGTAGA GGAGTGCCAAATAGTGTGTCTATATGA
AA sequence Show only first row Show all	>Lus10013151 pacid=23164160 polypeptide=Lus10013151 locus=Lus10013151.g ID=Lus10013151.BGIv1.0 annot-version=v1.0 MALTREITGGASLFPRPSFLPSTNLLSTRPVFLPMRRRPIVVAAISEDLIQKVTNFVSSENPAPPPPPRAALTVRAVVTVKNKNKEDFKESLVKKIDAFT DKIGRNVVLELISTELDPKTNAPKRSKGAVLKDWSKKSNVKAERVHYSADFTVDSDFGVVGAITVSNKHQREFFLESITLEGFASGPVHFPCNSWVQSTK HHPAKRIFFSNEPYLPSETPSGLRALRERELKDLRGDGTGVRKLSDRVYDYDIYNDLGNPDKGIDYARPALGGAKIPYPRRCRTGREPTYTDSNAESRVE KPTPMYVPRDEQFEESKKKSFSYGRLKAVLHTLVPMLKASITAQNRDFSAFADIDILYKEGILLKVGIQDEIWKKLPLPKAVYSFTESSEGLLRYDTPKI LSKDKFAWLRDDEFARQAIAGVNPINIERLKEFPPKSNLDPEIYGTLESALTEEHLLGQIDGMSVQQALEENKLFIVDYHDAYLPFLDKINALDGRNTYA TRTVFFLTSQGTLKPIAIELSLSPGGPPSRSKRVITPPVDATSYWIWQLAKSHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHM RYTLEINALARQSLINADGVIESCFTPGRYCSEISAAAYRNFWRFDKEGLPADLIRRGMAVPDPTEPHGLKLLLEDYPYAQDGLLIWSAIENWVRTYVNH YYPNRTTVQRDSELQAWYSESINVGHADLRHADWWPALETSEDLISILTTIIWIASAQHAALNFGQYPYGGYVPNRPPLMRRHIPDQNDPEYENFQADPQ RFFLSALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSVWSGDAEVVEAFYEFSAEIQRIEKEIERRNNDPGLKSRCGAGVLPYELLAPSSEPGVTCR GVPNSVSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	0	1
					Lus10006091 [exp]	1.4	0.9650
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	2.0	0.9439
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	3.7	0.9189
					Lus10039474 [exp]	4.9	0.9272
AT4G17140			pleckstrin homology (PH) domai...		Lus10003381 [exp]	6.0	0.8875
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	6.2	0.9027
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	7.3	0.9224
AT4G34950			Major facilitator superfamily ...		Lus10025053 [exp]	8.1	0.8989
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	8.5	0.9151
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	9.2	0.8955

Compare expression of checked genes

Lus10013151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.