Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54120 55 / 2e-10 unknown protein AT3G14060 41 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008114 [exp] 144 / 6e-46 AT1G54120 73 / 3e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G167600 [exp] 67 / 6e-15 AT1G54120 59 / 4e-12 unknown protein Potri.003G067200 [exp] 61 / 1e-12 AT3G14060 66 / 1e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013152 pacid=23164193 polypeptide=Lus10013152 locus=Lus10013152.g ID=Lus10013152.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCCCACCCCATCTCCACCGTCAAAAACCCACCACCACCGCCGCCGCACTGCGGCGGAAGACGCGGCCTCGTACTTCGCCGCCGCAGGAAAC TCCCCGTCGTCCGCCTTGGCAGCGGACGACCAAGACCGCGAAAAGCATTTTCCCTCGGGAGAATGCTCAGAAGGGTGAGGCTCCGGTGGCTGAAACTCCG GTACGGCCAATTCTTCAAGAAGCTGAAGGAGTACTACAAGGGCTTGGTTAAGGACATCATCGACGCCGGAGCCACCATCGAAGCTTACCAACAGAGGATG TTAATGGAGACGAGCTTGGCTGTTCCCATGGGCGTTTCTTTCTCTACTTTCCCCATGGCGGCTGCCGGTCGATCGGATCTCTACCGCCTTCCTCGCTACG GCGGCGGCCTCTCCGTCTGA
AA sequence Show only first row Show all	>Lus10013152 pacid=23164193 polypeptide=Lus10013152 locus=Lus10013152.g ID=Lus10013152.BGIv1.0 annot-version=v1.0 MASSHPISTVKNPPPPPPHCGGRRGLVLRRRRKLPVVRLGSGRPRPRKAFSLGRMLRRVRLRWLKLRYGQFFKKLKEYYKGLVKDIIDAGATIEAYQQRM LMETSLAVPMGVSFSTFPMAAAGRSDLYRLPRYGGGLSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54120			unknown protein		Lus10013152 [exp]	0	1
AT4G02090			unknown protein		Lus10010014 [exp]	1.4	0.8854
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	3.2	0.8654
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	3.5	0.8933
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	4.2	0.8564
AT1G61930			Protein of unknown function, D...		Lus10002073 [exp]	6.3	0.8560
					Lus10025897 [exp]	6.7	0.8835
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	10.2	0.8797
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	11.8	0.8810
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	12.4	0.8554
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10015083 [exp]	15.1	0.8423

Compare expression of checked genes

Lus10013152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.