Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20570 196 / 3e-66 HRT1, ROC1, RBX1, ATRBX1 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) AT3G42830 176 / 2e-58 RING/U-box superfamily protein (.1) AT3G05870 67 / 1e-15 APC11 anaphase-promoting complex/cyclosome 11 (.1.2) AT3G47180 41 / 6e-05 RING/U-box superfamily protein (.1) AT5G17600 40 / 0.0002 RING/U-box superfamily protein (.1) AT3G16090 40 / 0.0002 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT5G40250 40 / 0.0002 RING/U-box superfamily protein (.1) AT1G65040 39 / 0.0002 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G03550 39 / 0.0004 RING/U-box superfamily protein (.1) AT3G48030 39 / 0.0004 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015667 [exp] 198 / 2e-67 AT5G20570 200 / 5e-68 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10008115 [exp] 129 / 4e-40 AT5G20570 129 / 2e-40 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10037680 [exp] 121 / 4e-37 AT5G20570 122 / 9e-38 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10015126 [exp] 67 / 5e-15 AT3G05870 156 / 2e-50 anaphase-promoting complex/cyclosome 11 (.1.2) Lus10031549 [exp] 67 / 3e-14 AT3G05870 158 / 6e-50 anaphase-promoting complex/cyclosome 11 (.1.2) Lus10040359 [exp] 39 / 0.0005 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023477 [exp] 39 / 0.0005 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10034587 [exp] 38 / 0.0006 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10032161 [exp] 38 / 0.0008 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G067100 [exp] 198 / 2e-67 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.001G167400 [exp] 195 / 3e-66 AT5G20570 203 / 3e-69 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.006G141300 [exp] 195 / 4e-66 AT5G20570 209 / 1e-71 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.017G037701 [exp] 47 / 2e-08 AT3G05870 123 / 5e-39 anaphase-promoting complex/cyclosome 11 (.1.2) Potri.001G322600 [exp] 43 / 1e-05 AT5G08139 71 / 5e-14 RING/U-box superfamily protein (.1) Potri.002G140600 [exp] 43 / 1e-05 AT3G60220 194 / 3e-59 TOXICOS EN LEVADURA 4 (.1) Potri.006G239500 [exp] 39 / 0.0003 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 38 / 0.0005 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 38 / 0.0006 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.013G088400 [exp] 38 / 0.0006 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013153 pacid=23164153 polypeptide=Lus10013153 locus=Lus10013153.g ID=Lus10013153.BGIv1.0 annot-version=v1.0 ATGGATACCGACGTCAACATGATTCCGGCCGGCGAGGCAAGCTCCAGCGCCCCCGGACCTTCTTCTTCCGCCAAGAAACCCAAGCGTTTCGAGATCAAAA AGTGGAATGCCGTCGCTCTGTGGGCATGGGATATCGTGGTGGATAACTGCGCGATTTGCAGGAATCATATCATGGATCTGTGCATCGAGTGCCAAGCTAA TCAAGCTAGCGCCACCAGCGAGGAGTGTACTGTTGCTTGGGGTGTGTGTAACCATGCCTTTCACTTCCACTGCATTAGTCGCTGGTTGAAAACCCGTCAA GTCTGCCCTCTTGATAACAGTGAGTGGGAATTCCAGAAGTATGGCCACTGA
AA sequence Show only first row Show all	>Lus10013153 pacid=23164153 polypeptide=Lus10013153 locus=Lus10013153.g ID=Lus10013153.BGIv1.0 annot-version=v1.0 MDTDVNMIPAGEASSSAPGPSSSAKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ VCPLDNSEWEFQKYGH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10013153 [exp]	0	1
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10008115 [exp]	1.0	0.8262
AT4G24760			alpha/beta-Hydrolases superfam...		Lus10042075 [exp]	1.4	0.8126
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	6.0	0.7873
AT4G26620			Sucrase/ferredoxin-like family...		Lus10022532 [exp]	9.6	0.6956
AT5G65960			GTP binding (.1)		Lus10035977 [exp]	13.2	0.7434
AT3G24100			Uncharacterised protein family...		Lus10016668 [exp]	14.8	0.7850
AT4G20150			unknown protein		Lus10038391 [exp]	15.8	0.7809
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	31.1	0.7308
AT3G07910			unknown protein		Lus10039527 [exp]	33.7	0.7581
AT1G16740			Ribosomal protein L20 (.1)		Lus10033326 [exp]	34.1	0.7655

Compare expression of checked genes

Lus10013153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.