Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14067 833 / 0 Subtilase family protein (.1) AT5G67360 650 / 0 ARA12 Subtilase family protein (.1) AT2G05920 634 / 0 Subtilase family protein (.1) AT3G14240 608 / 0 Subtilase family protein (.1) AT4G34980 596 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT5G51750 579 / 0 ATSBT1.3 subtilase 1.3 (.1) AT5G59810 519 / 3e-174 ATSBT5.4 Subtilase family protein (.1) AT2G04160 503 / 4e-168 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 502 / 1e-167 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 494 / 8e-165 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008116 [exp] 893 / 0 AT3G14067 632 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 656 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 640 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 637 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 630 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 620 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 615 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 587 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 582 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G167300 [exp] 907 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 905 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 661 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 645 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 628 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 615 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 608 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.005G145300 [exp] 602 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 600 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 599 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10013154 pacid=23164159 polypeptide=Lus10013154 locus=Lus10013154.g ID=Lus10013154.BGIv1.0 annot-version=v1.0 ATGGCACCGCCGCCGCTGCCATCTCTCCTGTTCTTCTTCATCTTACTCGTTTCCTCTTCCTCCGCCGCCTCGCCGGAAACTAACCATCAAACCTTCATCG TCCACGTCAGCAAATCCCACAAGCCATCCATCTTCTCCTCTCACCATCACTGGTACTCTTCCATCCTCACGTCCCTCGATTCCAAACCTTCCACGCTCCT CTACTCATACTCACGCGCCGCCACCGGATTCTCCGCCACCCTCACCGCCGACCAAGCCGACAAACTCATTCGCCTCCCCGGCGTCCTCTCTGTCGTCCCC GACCAGATCCACCACCTCCACACCACTCACACCCCTTCCTTCCTCGGCCTCTCCGCCGACTCCGGCCTCTGGGTCAACTCCGGCTACGGCGACGGCGTTA TCATCGGCGTCATCGACACCGGAATATGGCCGGACCACCCTTCCTTCTCTGATCACGAATTCTCCTCCGATGACGTCGTCCCCGCCAAGTGGCGCGGTAC TTGCGAGATCAGTAAGGATTTCCCCGCGGAGGCTTGTAATCGGAAGTTAATCGGAGCTAGGACGTTCTACAAGGGATATGAGAGCTACAGAGGGAGACCC ATCGACGAATCTGTCGAATCGAAGTCTCCGAAAGATACGGAAGGGCATGGGACCCACACTGCATCTACCGCCGGAGGCTCGATTGTACGGAATGCTAGCT TGTTCCACTACGCAGCCGGAGAAGCTCGCGGCGTAGCCACGAAAGCCTGGATCGCTGCTTATAAGATCTGCTGGCTACCGGGATGCTTCAATTCGGATAT CTTAGCAGCCATGGATCAGGCGATTGAAGACGGGGTCGATGTGATCTCTCTTTCGGTCGGATCTAGCTATGCGTCGCCTTACGATGCAGATTCGATCGCG ATCGGAGCTTTTTCCGCCGCTAGGGAAGGGATCGTGGTTTCCTGCTCAGCAGGAAACTCCGGTCCGGGAGCTTACACGGCGTCGAACATCGCGCCTTGGA TTTTAACAGTCGGAGCTTCGACGATCGATCGGGAATTTCCGGCTGATGTTGTACTCGGCGACGGATCCGTCCACGGCGGAGTTTCTCTTTATTACGCAGA CGGCAGCGGACTTCCTCAGGACGAGCTGCTTCCGTTGGTGTACAGCGCCGATTGCGGTAGCCGGTACTGCTATTCCGGCCTTCTCGATCCCGCCAAAGTC AACGGGAAGATTGTGCTGTGTGATCGTGGAGGTAATGCGAGAGTCGAAAAGGGAGCCGCCGTGAAACTGGCTGGAGGTGTTGGGATGATCATGGCGAATA CTGATTTGGAAGGGAATGAACTGCTGGCCGACGCTCATTTGATCCCGGCGACGATGGTTGGAGCTACGGAAGGGGATAAGATCCATACACCGCCGGCTCC TAAAGTCGCATCGTTCTCCAGCCGCGGTCCGAATCGGATCACCCCGGAGATTCTTAAGCCGGATGTTATTGCTCCTGGAGTCAACATTTTGGCCGGTTGG ACTGGCGCGGCAAGTCCTACTGACTTGGACATTGATCCTAGAAGAGTCAAATTCAACATCATATCAGGGACATCGATGTCGTGCCCACACGTGAGCGGGC TAGCAGCATTACTAAAGAAGGCACATCCATATTGGTCACCGGCAGCCGTAAAATCAGCTCTAGTAACCACAGCAACCACTCTAGACAACACCGGAGCCAA CATCAACGATCTCGCCACCGGAAAAGGCACGAACCCGTTCGTGTACGGAGCAGGACACGTCGATCCAAACGCAGCCCTAAGTCCCGGCCTCATCTACGAC ATCAACACAACCGACTATGTCGCATTCTTCTGCTCGATCGGGTACACACCCACCCGAATCGCCGTCTTCTTCGGTGCGCCAGTCAAGTCAAACATCTGCG ACGAACTGGCTTCCGGTCCCGGGGATCTCAACTACCCCTCATTCTCTGTAACGTTCAAACACAGTGTTAATGCGGTGACGTACAAAAGGGTTGTGACGAA TGTTGGGAGCGCGGTCGATGCAGTTTACAAACTCAAAATCAACTCCCCTGTGAATGTTGATGTTGAGGTATCGCCTAGCGAGCTTGTGTTTAGCAGTGAG AATCGCTCATTGTCATACGAGATTAAGTTCTCCAGCGTGGTTGGTGGGTTTGCGAACGCTGCGACGCAGAGCTTCGGGTTCATAGAGTGGAGCGATGGTG TGCATCGCGTTCGGAGTCCAGTTGCTGCACAGTGGAGCCAGGGAGCTTCGGTGGAGTCTATTTAG
AA sequence Show only first row Show all	>Lus10013154 pacid=23164159 polypeptide=Lus10013154 locus=Lus10013154.g ID=Lus10013154.BGIv1.0 annot-version=v1.0 MAPPPLPSLLFFFILLVSSSSAASPETNHQTFIVHVSKSHKPSIFSSHHHWYSSILTSLDSKPSTLLYSYSRAATGFSATLTADQADKLIRLPGVLSVVP DQIHHLHTTHTPSFLGLSADSGLWVNSGYGDGVIIGVIDTGIWPDHPSFSDHEFSSDDVVPAKWRGTCEISKDFPAEACNRKLIGARTFYKGYESYRGRP IDESVESKSPKDTEGHGTHTASTAGGSIVRNASLFHYAAGEARGVATKAWIAAYKICWLPGCFNSDILAAMDQAIEDGVDVISLSVGSSYASPYDADSIA IGAFSAAREGIVVSCSAGNSGPGAYTASNIAPWILTVGASTIDREFPADVVLGDGSVHGGVSLYYADGSGLPQDELLPLVYSADCGSRYCYSGLLDPAKV NGKIVLCDRGGNARVEKGAAVKLAGGVGMIMANTDLEGNELLADAHLIPATMVGATEGDKIHTPPAPKVASFSSRGPNRITPEILKPDVIAPGVNILAGW TGAASPTDLDIDPRRVKFNIISGTSMSCPHVSGLAALLKKAHPYWSPAAVKSALVTTATTLDNTGANINDLATGKGTNPFVYGAGHVDPNAALSPGLIYD INTTDYVAFFCSIGYTPTRIAVFFGAPVKSNICDELASGPGDLNYPSFSVTFKHSVNAVTYKRVVTNVGSAVDAVYKLKINSPVNVDVEVSPSELVFSSE NRSLSYEIKFSSVVGGFANAATQSFGFIEWSDGVHRVRSPVAAQWSQGASVESI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14067			Subtilase family protein (.1)		Lus10013154 [exp]	0	1
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	9.5	0.7854
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10021427 [exp]	13.0	0.7670
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	14.7	0.7959
AT2G32450			Calcium-binding tetratricopept...		Lus10010627 [exp]	19.4	0.7686
AT3G51010			unknown protein		Lus10028346 [exp]	20.5	0.6935
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042295 [exp]	23.3	0.7441
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	24.6	0.7809
AT5G03490			UDP-Glycosyltransferase superf...		Lus10036837 [exp]	27.9	0.6273
AT1G04570			Major facilitator superfamily ...		Lus10023708 [exp]	32.4	0.7214
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	35.6	0.7570

Compare expression of checked genes

Lus10013154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.