Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54100 845 / 0 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT1G79440 204 / 5e-58 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 201 / 1e-56 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G74920 181 / 1e-49 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G24503 178 / 8e-49 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 177 / 3e-48 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G48170 168 / 3e-45 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT2G14170 142 / 3e-36 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT2G24270 127 / 8e-31 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT3G66658 119 / 3e-28 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008117 [exp] 975 / 0 AT1G54100 883 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Lus10029166 [exp] 181 / 2e-49 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 179 / 1e-48 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10042149 [exp] 174 / 4e-47 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10034115 [exp] 175 / 5e-47 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10001845 [exp] 173 / 1e-46 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10023625 [exp] 167 / 1e-44 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 162 / 7e-43 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 162 / 1e-42 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G067700 [exp] 877 / 0 AT1G54100 850 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Potri.001G167100 [exp] 870 / 0 AT1G54100 823 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Potri.002G189900 [exp] 195 / 2e-54 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.010G174000 [exp] 194 / 2e-54 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.012G075600 [exp] 194 / 2e-54 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G078700 [exp] 185 / 4e-51 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G070600 [exp] 183 / 1e-50 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G074100 [exp] 184 / 2e-50 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.018G075000 [exp] 162 / 3e-43 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.001G242333 [exp] 161 / 1e-42 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10013155 pacid=23164186 polypeptide=Lus10013155 locus=Lus10013155.g ID=Lus10013155.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGAGGGATGGAAAATGTGAATTTGAGTTCATCGTCTTCCTCAAGTGGAGGGTCTTCTTCTTTGACGGCGACGGCGGTTGCTCAACCACCGG TCAGCCCTAAATCGCCGCCTTCTGGTTCGTTGGATTTGTATGGGAAGAGAAGGCAGCTTGTCAAAGTTCAAATCTTGGAACGAGAGATTGCCCTCCTTCA GGGAAAACTAGTCCAGAGCTGTGAAAGATCAAAACTTTCATGGATGGTGCTGATGGAATTCATTGTTTTTTTGCAAATTGGGGGAGAACAGGAAGAGTTG AAAGCTGTGGAAGGCCTGGAACTAGCTTCAAAGTGCTGCAAAGAGCTTCATGACTATGTAGATGGGAAACAGGACCCTCTTGTGCCATCGTCTGATCGAA AGTTCGGATCTTTGCGTCTCATACCAACTGGGTTTGTTGTTCGTTCTGTAGAAATGGGGTTCGAGAAGAAAGAGTATGAATTTCTGGGCGAGATAGGGCT GAGCTCGAGCAATCTTGGCTGTTATGTGGGTGGGAAATGGAAGGCAAATGGACCTGTGATAACAACTACGAACCCTGCCAACAACCAGACAATTGCTGAA GTGGTTGAGGGTTCCATGGAAGACTATGAGGAGGGCTTGAAAGCTTGCAGTGAAGCAACGAAGACATGGATGCAGGTTCCTGCTCCAAAGAGAGGTGAGA TTGTTAGGCAGATTGGGGATGCACTCAGAGTCAAACTTGATTATCTCGGCCGTCTTGTCTCTCTCGAGATGGGCAAGATACTTGCTGAAGGAGTAGGAGA AGTTCAGGAAATTATCGACATGTGTGATTTTGCTGTCGGGTTGAGCAGGCAACTGAACGGATCCATTATCCCTTCCGAGCGTCCGAACCACGCCATGTTG GAGATGTGGAACCCTCTCGGAATTGTTGGTGTTATCACTGCTTTCAACTTCCCTTGTGCTGTTCTTGGATGGAATGCTTGCCTTGCGCTAGTTTGTGGCA ACTGCGTTGTCTGGAAAGGTGCTCCAACTACACCTTTGGTCACCATAGCAATGACAAAGCTGATTGCTGAGGTGCTCGAGAAGAACAATTTACCTGGTGC GATATTTACATCGTTATGTGGCGGTGCTGAAATTGGTCAAGCCATAGCGAAAGACACTCGTATTCCTCTAGTCTCCTTCACCGGGAGTTCAAAGGTGGGA CAAATGGTGCAGCAAATAGTCAGCCAGAGATTCGGCAAATGCTTGCTCGAGTTAAGTGGAAACAATGCCATCATCGTTATGGACGATGCAGACGTTCAGC TTGCTGCCCGTTCGGTTCTCTTTGCTGCTGTTGGGACAGCCGGTCAGCGATGCACGACTTGCCGTCGTCTGCTCCTCCACGAGAGCATCTACAAGAAAGT ACTCGATCAGCTAGTCGAAGCTTACAAACAAGTGAAAATCGGCGATCCGTTAGAGAAAGGTACCCTCCTTGGGCCGTTGCATACTACCGAGTCGAGGAAA AACTTCGAGAGGGGAATCGAGCTCGGAGGGAATATCCTGGCCGGAGGATCGATCATAAAATCCGACGGGAATTTCGTGCAGCCAACGATTGTAGAGGTTG CTCCAACTGTAATTGCAGTTAAAGAAGAGCTCTTTGCGCCTGTTTTGTATGTGATGAAATTTAAGACTTTGCAAGAGGCTATTGATATAAACAACTCAGT GCCACAAGGATTAAGCAGTTCTATCTTCACCCAGAAGCCTGAAACTATCTTCAAATGGATCGGGCCATTCGGAAGCGACTGCGGTATTGTGAATGTGAAC ATACCGACAAACGGCGCAGAAATCGGTGGCGCATTTGGTGGGGAAAAGGCGACCGGAGGTGGTCGAGAAGCTGGAAGTGATTCGTGGAAGCAGTACATGC GCCGATCAACTTGCACAATCAATTATGGAAACGAGTTGCCCCTAGCTCAAGGAATCAATTTCTGCTGA
AA sequence Show only first row Show all	>Lus10013155 pacid=23164186 polypeptide=Lus10013155 locus=Lus10013155.g ID=Lus10013155.BGIv1.0 annot-version=v1.0 MKGGGMENVNLSSSSSSSGGSSSLTATAVAQPPVSPKSPPSGSLDLYGKRRQLVKVQILEREIALLQGKLVQSCERSKLSWMVLMEFIVFLQIGGEQEEL KAVEGLELASKCCKELHDYVDGKQDPLVPSSDRKFGSLRLIPTGFVVRSVEMGFEKKEYEFLGEIGLSSSNLGCYVGGKWKANGPVITTTNPANNQTIAE VVEGSMEDYEEGLKACSEATKTWMQVPAPKRGEIVRQIGDALRVKLDYLGRLVSLEMGKILAEGVGEVQEIIDMCDFAVGLSRQLNGSIIPSERPNHAML EMWNPLGIVGVITAFNFPCAVLGWNACLALVCGNCVVWKGAPTTPLVTIAMTKLIAEVLEKNNLPGAIFTSLCGGAEIGQAIAKDTRIPLVSFTGSSKVG QMVQQIVSQRFGKCLLELSGNNAIIVMDDADVQLAARSVLFAAVGTAGQRCTTCRRLLLHESIYKKVLDQLVEAYKQVKIGDPLEKGTLLGPLHTTESRK NFERGIELGGNILAGGSIIKSDGNFVQPTIVEVAPTVIAVKEELFAPVLYVMKFKTLQEAIDINNSVPQGLSSSIFTQKPETIFKWIGPFGSDCGIVNVN IPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRSTCTINYGNELPLAQGINFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	0	1
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	1.0	0.9606
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	1.4	0.9596
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	1.7	0.9588
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	3.2	0.9541
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	3.2	0.9512
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	4.0	0.9547
AT3G48860			unknown protein		Lus10036015 [exp]	4.2	0.9515
AT1G29760			Putative adipose-regulatory pr...		Lus10034735 [exp]	4.9	0.9407
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	5.4	0.9378
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	5.7	0.9509

Compare expression of checked genes

Lus10013155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.