Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72510 146 / 2e-45 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) AT2G09970 130 / 4e-39 Protein of unknown function (DUF1677) (.1) AT5G20670 107 / 2e-30 Protein of unknown function (DUF1677) (.1) AT3G22540 98 / 5e-27 Protein of unknown function (DUF1677) (.1) AT4G14819 93 / 4e-25 Protein of unknown function (DUF1677) (.1) AT1G79770 91 / 2e-23 Protein of unknown function (DUF1677) (.1) AT1G54095 89 / 4e-23 Protein of unknown function (DUF1677) (.1) AT5G25840 90 / 5e-23 Protein of unknown function (DUF1677) (.1) AT2G25780 76 / 1e-17 Protein of unknown function (DUF1677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008118 [exp] 260 / 4e-90 AT1G72510 157 / 1e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10037683 [exp] 152 / 2e-47 AT1G72510 134 / 2e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10015670 [exp] 151 / 2e-47 AT1G72510 139 / 7e-43 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10011427 [exp] 98 / 4e-26 AT5G25840 172 / 5e-55 Protein of unknown function (DUF1677) (.1) Lus10037569 [exp] 93 / 2e-24 AT5G25840 173 / 1e-55 Protein of unknown function (DUF1677) (.1) Lus10010564 [exp] 91 / 7e-24 AT3G22540 151 / 1e-48 Protein of unknown function (DUF1677) (.1) Lus10006107 [exp] 89 / 3e-23 AT3G22540 155 / 2e-50 Protein of unknown function (DUF1677) (.1) Lus10006044 [exp] 87 / 1e-21 AT5G25840 175 / 2e-56 Protein of unknown function (DUF1677) (.1) Lus10000571 [exp] 87 / 1e-21 AT5G25840 174 / 9e-56 Protein of unknown function (DUF1677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166900 [exp] 166 / 3e-53 AT1G72510 190 / 2e-62 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.003G067800 [exp] 156 / 3e-49 AT1G72510 194 / 5e-64 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G219100 [exp] 121 / 5e-36 AT1G72510 131 / 7e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G140600 [exp] 118 / 2e-34 AT5G20670 147 / 5e-46 Protein of unknown function (DUF1677) (.1) Potri.003G050200 [exp] 103 / 3e-28 AT5G25840 152 / 3e-47 Protein of unknown function (DUF1677) (.1) Potri.001G188700 [exp] 102 / 1e-27 AT1G79770 157 / 2e-49 Protein of unknown function (DUF1677) (.1) Potri.010G086000 [exp] 93 / 5e-25 AT4G14819 136 / 3e-43 Protein of unknown function (DUF1677) (.1) Potri.008G154500 [exp] 92 / 1e-24 AT3G22540 133 / 1e-41 Protein of unknown function (DUF1677) (.1) Potri.006G237300 [exp] 86 / 2e-21 AT2G25780 122 / 6e-36 Protein of unknown function (DUF1677) (.1) Potri.015G031700 [exp] 79 / 7e-20 AT4G14819 75 / 5e-19 Protein of unknown function (DUF1677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07911 [flax] [poplar] DUF1677 Protein of unknown function (DUF1677)
Representative CDS sequence Show only first row Show all	>Lus10013156 pacid=23164161 polypeptide=Lus10013156 locus=Lus10013156.g ID=Lus10013156.BGIv1.0 annot-version=v1.0 ATGTCAGCAACAATAATAAGCGACCCAGTGACAGTCCCCCCGGTGCCGGAGACTCAGCAGCCAGCAGCACCACCGGCGGCGGCTGAAGTGGAATCCGCAA GATGCGACTGCTGCGGGATGACAGAGGAATGCACGCCGGAGTACATCAAACGAATCAGAGAGCGATACTCCGGCAAGTGGGTCTGCGGACTTTGCAGCGA AGCGGTGAAAGACGAGATCTCCAGGAAAACAGTGGAGAAACTACTGATCAGAACCGACGAAGCTCTGGCGAGGCACATTAGTTTCTGCAAGAAATTCTCG TCTCCCGATCTGCCTCCGGTGGATCCCACCTTGCATTTGATCTCGGCAATGAGGCAGATCCTTCGGAAGAGTTTCGATTCTCTGCCTCGTCCTCCGGTGA TCAGATCCACTCCGGCGAGTCCGGTGGCGAAACGGCCGGCGGTGGCCAAGAAGTTCACCAGGTCCGACAGCTGCTTCTCGTCCCTCTCCGGTTGA
AA sequence Show only first row Show all	>Lus10013156 pacid=23164161 polypeptide=Lus10013156 locus=Lus10013156.g ID=Lus10013156.BGIv1.0 annot-version=v1.0 MSATIISDPVTVPPVPETQQPAAPPAAAEVESARCDCCGMTEECTPEYIKRIRERYSGKWVCGLCSEAVKDEISRKTVEKLLIRTDEALARHISFCKKFS SPDLPPVDPTLHLISAMRQILRKSFDSLPRPPVIRSTPASPVAKRPAVAKKFTRSDSCFSSLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72510			Protein of unknown function (D...		Lus10013156 [exp]	0	1
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10042535 [exp]	1.4	0.9109
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	1.4	0.9129
AT1G67570			Protein of unknown function (D...		Lus10043011 [exp]	6.5	0.8926
AT4G14380			unknown protein		Lus10011818 [exp]	14.2	0.8646
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10035334 [exp]	18.5	0.8776
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	21.4	0.8502
AT4G22600			unknown protein		Lus10028923 [exp]	21.7	0.8814
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	24.8	0.9074
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	25.5	0.8565
AT2G42390			protein kinase C substrate, he...		Lus10002183 [exp]	26.3	0.8497

Compare expression of checked genes

Lus10013156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.