Plant FIBer expression Database

Lus10013157 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64180 173 / 3e-56 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008120
[exp]
230 / 9e-79 AT5G64180 204 / 2e-68 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G022200
[exp]
186 / 3e-61 AT5G64180 179 / 2e-58 unknown protein
Potri.015G005600
[exp]
181 / 4e-58 AT5G64180 144 / 1e-43 unknown protein
PFAM info
Representative CDS sequence
>Lus10013157 pacid=23164128 polypeptide=Lus10013157 locus=Lus10013157.g ID=Lus10013157.BGIv1.0 annot-version=v1.0
ATGGAGGAGATTGGCGAAGAGAGATGGCAAGGAGCTATAGTGAATTTGACAGAGATGACATCAAATTTGGAGTCTTTGCAGAAGCTACTTCTTAACAAGG
CAGTGTTTGTTGATGAAGAAACTTACGGCAAATCATCTCTGACTTCTGAACAAGCCCGTACCATTAAAGTTCTTGAACAAAGGGTAGAGACTTTGGAAAG
AGAACTTGATGCGGCCATCTCAGCTGCAGCTCGTGCTCGTGCAGAGAAGCGACAAGCTGAAGTAGCACAAAAGGCTGCTGAATTACAGGCACAGCAAGTC
ACCAAAGAACTTGAAAACACTACAAAGGTGTTTAAACTGCACATGGAGGAGCTGCGAGCAAAGCAAGATGAGATCGTAAAGCGGGACAATGACATTAAAC
TGTTGGAAGCAATCATCCAGACTTTGGGTGGAAGAGAATCGCATTCCTCAACTTGA
AA sequence
>Lus10013157 pacid=23164128 polypeptide=Lus10013157 locus=Lus10013157.g ID=Lus10013157.BGIv1.0 annot-version=v1.0
MEEIGEERWQGAIVNLTEMTSNLESLQKLLLNKAVFVDEETYGKSSLTSEQARTIKVLEQRVETLERELDAAISAAARARAEKRQAEVAQKAAELQAQQV
TKELENTTKVFKLHMEELRAKQDEIVKRDNDIKLLEAIIQTLGGRESHSST

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64180 unknown protein Lus10013157
[exp]
0 1
AT4G14965 ATMAPR4 membrane-associated progestero... Lus10042022
[exp]
4.5 0.8543
AT4G14455 ATBS14B ,ATBET1... ARABIDOPSIS THALIANA BET1P/SFT... Lus10041158
[exp]
5.5 0.8177
AT2G37060 CCAAT NF-YB8 "nuclear factor Y, subunit B8"... Lus10023484
[exp]
6.0 0.8388
AT1G63460 ATGPX8 glutathione peroxidase 8 (.1) Lus10008023
[exp]
8.1 0.8284
AT1G12650 unknown protein Lus10020336
[exp]
11.2 0.7994
AT2G37195 unknown protein Lus10023187
[exp]
12.0 0.8122
AT3G61113 Ubiquitin related modifier 1 (... Lus10036551
[exp]
12.8 0.8338
AT1G15910 FDM1 factor of DNA methylation 1, X... Lus10040288
[exp]
15.5 0.7892
AT5G59460 scarecrow-like transcription f... Lus10001576
[exp]
15.5 0.8211
AT5G55140 ribosomal protein L30 family p... Lus10031912
[exp]
18.3 0.8143

Lus10013157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.