Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14075 719 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT4G16070 541 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT2G42450 112 / 1e-25 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 76 / 4e-14 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 72 / 3e-13 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G37710 64 / 1e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G05790 61 / 2e-09 lipase class 3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008121 [exp] 1067 / 0 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10015680 [exp] 863 / 0 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10016834 [exp] 587 / 0 AT4G16070 750 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037710 [exp] 543 / 0 AT4G16070 764 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037690 [exp] 124 / 1e-33 AT3G14075 137 / 4e-39 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10024878 [exp] 120 / 1e-28 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 117 / 8e-27 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 81 / 9e-16 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 80 / 1e-15 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G067900 [exp] 780 / 0 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 624 / 0 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 605 / 0 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 118 / 7e-28 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G159200 [exp] 82 / 4e-16 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G142700 [exp] 81 / 4e-16 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 77 / 1e-14 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 75 / 5e-14 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G086900 [exp] 65 / 1e-10 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 65 / 1e-10 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10013158 pacid=23164192 polypeptide=Lus10013158 locus=Lus10013158.g ID=Lus10013158.BGIv1.0 annot-version=v1.0 ATGGCAACGGCAACAATGGCGACGGCAGCTGGTGTAGCTGCTCTTTTGTACTACACATTGAACCGAAAACTACAGACAGACGAACCGTACGATGATGATG ACGACGAGAATGATAGCGTTAGTGATGCAGCCTCTCGGGTGCCATTGGTAATCAACCGCGTCTCGAGCAGCCGGTTGATTCAAGCTCCTGGGACGTGGTT GGAGACGATCTCGACTTTGTCCGAGACTCTTAGGTTCACTTATTCCGAGACCCTTGGGAAATGGCCGATTGCGGATTTGGCGTTCGGGATCAACTTCCTA TTGAAGAGGCAGGGGAATTTGCTGGTTGCTGAGGTATTTGGTGGTAAAGATAGTATCCAGCTAAAGGGAAAGGAAATAGCAGCTGAATTGAAATACCTCT TGCATTTGTTAACCTTGTGTTGGCATTTCTCCAAAAAGCCTTTTCCTTTGTTCTTGGAGGAGACTGGATTCAGCCAGGAACATGTTCTTCTTCAAGAGCC GAAAGCAGGAATATTGAAGCCGGCTTTCACAGTGTTAATCGATCACCCTACGAAACAGTTTCTATTATTGATACGTGGGACGCATAGCGTCAAGGATACA TTGACGGCTGCAACTGGTGCAGTTGTGCCGTTTCATCACACTGTTGTCAATGACGGAGGAGTCAGCAACTTAGTTCTAGGGTATGCTCATTGCGGGATGG TTGCTGCTGCTCGGTGGATTTCGAAGCTTGCTATTCCTTGTCTGAAGGACGCTCTTTCCCAGTACCCTGATTATAAACTCAAGATTGTAGGGCATTCGTT AGGTGGAGGAACTGCAGCACTTTTAACCTATGTAATGCGGGAACAGCACGAATTCTTAACAACCACTTGTGTTTCATTTGCTCCAGCTGCTTGTATGACT TGGGAGCTGGCCGAATCGGGCAACGATTTCATCACGTCTGTTATAAATGGAGCTGATCTTGTCCCAACTTTTTCTGCTGCTGCTGTGGATGATCTACGTG CTGAGGTGACAGCATCCGCATGGCTAAATGATTTGAGGAATCAAATTGAGCGAACAAGGATTCTAAGCACAGTTTATCGTTCAGCTTCGGCATTGGGTTC CCGGCTTCCATCCATCGCCAGTGCGAAAGCGAAAGTTGCTGGAGCAGGCGCTATGTTGCGACCAGTTTCGAACGGCACACAGGTTGTGATGAGGAGAGCT CAAACTATGGCTCATGCAGCATGGTCAACACGTCCGGCGCTGAATTTATCTTCATGGTCATGCATTGGACCGCGGCATCGAACCACCGCTGCACATCTAA GCCAAGTAGGGGAAGGAAGTTCACCTCGTTCGCCCTCGAAAACTCAAACATCTCGGTCTCTACTATCGCCTATGAAGAAGAACAAAAAGGCGGCTTCTTT AGACGACATCGACATTTCTGTATCGACCTGCGGAGAGCAATGGACTTCCGAAATCGAATATTCTTGCACTGATGAACCTACTCATCGTCCTCGCGATCTG AGCCAATCTGATCACGAGGATGATGCTGACTCGCACGAAGAAGACCGGATCGACGAGGTTGAGCTTTGGCAACAACTAGAGCACGAACTTTATGATGATG TCAGCGAAATACGAGAAGAAGAAGAAGCAGCGATTGAAGGTCCGCAACCGAACGAAGAGTATAGATTTTTACCGGCAGGGAAGATAATGCACATTGTTAC GTTTCGTCTCGAGGAGGATGTCGAAAGCAGCGATAGTGACGGCTCCTCGCCCTCCGATGGTGGTTTGGACCAGAGCAACCTGGCATTAGAGACTACGACT GGGATATTCCTGACGCCACGGTCGCTATATAGTAAAGTGAGGCTATCGCAGACAATGATTAGCGATCATTTCATGCCGGTTTATAGAAGGCAGATAGAGA GTGTAATACAAGAACTTGAGAAGGAAGAACAAGTTACTGACAGTGATTAA
AA sequence Show only first row Show all	>Lus10013158 pacid=23164192 polypeptide=Lus10013158 locus=Lus10013158.g ID=Lus10013158.BGIv1.0 annot-version=v1.0 MATATMATAAGVAALLYYTLNRKLQTDEPYDDDDDENDSVSDAASRVPLVINRVSSSRLIQAPGTWLETISTLSETLRFTYSETLGKWPIADLAFGINFL LKRQGNLLVAEVFGGKDSIQLKGKEIAAELKYLLHLLTLCWHFSKKPFPLFLEETGFSQEHVLLQEPKAGILKPAFTVLIDHPTKQFLLLIRGTHSVKDT LTAATGAVVPFHHTVVNDGGVSNLVLGYAHCGMVAAARWISKLAIPCLKDALSQYPDYKLKIVGHSLGGGTAALLTYVMREQHEFLTTTCVSFAPAACMT WELAESGNDFITSVINGADLVPTFSAAAVDDLRAEVTASAWLNDLRNQIERTRILSTVYRSASALGSRLPSIASAKAKVAGAGAMLRPVSNGTQVVMRRA QTMAHAAWSTRPALNLSSWSCIGPRHRTTAAHLSQVGEGSSPRSPSKTQTSRSLLSPMKKNKKAASLDDIDISVSTCGEQWTSEIEYSCTDEPTHRPRDL SQSDHEDDADSHEEDRIDEVELWQQLEHELYDDVSEIREEEEAAIEGPQPNEEYRFLPAGKIMHIVTFRLEEDVESSDSDGSSPSDGGLDQSNLALETTT GIFLTPRSLYSKVRLSQTMISDHFMPVYRRQIESVIQELEKEEQVTDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10013158 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	4.9	0.7981
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006056 [exp]	6.0	0.7862
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	10.0	0.7483
AT5G64230			unknown protein		Lus10033177 [exp]	10.4	0.7716
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	17.3	0.7594
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	20.7	0.7661
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	20.8	0.7099
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10027083 [exp]	38.8	0.7173
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	39.5	0.7155
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	43.1	0.6944

Compare expression of checked genes

Lus10013158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.