Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19110 699 / 0 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT1G72500 674 / 0 unknown protein AT1G08050 54 / 3e-07 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 52 / 1e-06 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 52 / 2e-06 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 49 / 1e-05 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008122 [exp] 1417 / 0 AT1G19110 732 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10039919 [exp] 664 / 0 AT1G19110 877 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10027666 [exp] 664 / 0 AT1G19110 874 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10023527 [exp] 52 / 2e-06 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 52 / 2e-06 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068000 [exp] 924 / 0 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.001G166800 [exp] 913 / 0 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.018G062500 [exp] 715 / 0 AT1G19110 882 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.008G038450 [exp] 51 / 3e-06 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 50 / 6e-06 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 47 / 6e-05 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 44 / 0.0005 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 43 / 0.0009 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Lus10013159 pacid=23164149 polypeptide=Lus10013159 locus=Lus10013159.g ID=Lus10013159.BGIv1.0 annot-version=v1.0 ATGGTGAACGCGGTGGTCACGGAGCCGGAGGCCGTGGACAACCCCGACGTTCCCAGCTACCAGCCGTACGTGCACGGCTGCTGCGATCCTCCCGCGCTGA TCCCGCTCCATATGTACGGAGTAGAGATGGAAGTGGATTGCTGCTTGGACTACGCGCGCGTGAGCGTCGGTGGACGGTGGCGCGTGCATTGCCTCAAGGG CGGCCGGACCTGCGATTGCCGCGTCGCGGTTCCGATGAGAGAGAAGGTTCGTGAGAATTTTTGTGTTAGTGTGTGTGGAATTTCGCTTTTCTGTTTAGAT GCTCGGTTTCTGTTCGATGAAATGCCTCTGAAGGGATGTTGGCTAAAATCACTAATAGCAGAGCAGGGTACAATTCTGAGTGTAGAGGTCGAAGTGGCGG GAAGACTGTACCATAGCCAATTGATGAATGCCGATGATGCAGAGGAGTTTGCTAAAACGAGTAAAGCATCATCATCTGGAGTTGGACGCTTTTTGAAAGG CAGCATTTACACTTTCAGAATTCCGCAGGTTGCAGGGGGATCTACTGTTTCAGTGAAAGTGAGCTGGTCGCAGAAGTTGGTATATCAAAGAGGCCAATTC AGCCTGGAAGTGCCATTTAGTTTTCCAGCATATGTGAATCCGCCAGCTGTTAGCAAGACGTCCAAAAGAGAGAAGATACTGTTGAACGTCAGCTCTGGTT TCAGCGATGAAATCACGTGCAGTTGCAGTAGCCATGCTCTGAAGGAGCTAAGGAGGGAAGTTGGTAAAATGGGGTTCTTTTATGAATCGGAAGTTAAGAC TTGGTCGGTTTCCAACTTCAGTTTTTCATACACAGTATGCTCTGAGGACTTGTTTGGTGGTGTGCTCTTGCAGTCCCCATATTTGAGAGATTTCGAGGAG AGGCAGATGTTCTGTTTGCATCTCTTCCCTGGAAATAACCAAACCAGGAAGGCTTTTAGGAGGGAGGTGATATTTGTAGTTGATATAAGCGGAAGCATGA AGGGAGATCCTCTTGAAAACACCAAATCTGCAATATCGTCATCATTGTATAAGCTCAACGAGGAGGATTCTTTCAACATTATTGCTTTCAACGGGGAGAT GTACATATTCTCATCCTTGATGGAGCCAGCATCCCAAGAAACGGTGACCAGAGCTAACGAATGGCTTAATGAAACCCTGGTTGCACAAGGGGGGACGGAT ATTTTGCCTCCTCTTAAACAGGCTATGAAGCTCTTGGCTGAAACTACCAACTCAATTCCTCTCATTTTCCTCATCACGGATGGGACTGTTGAAGATGAAA GAGACATCTGCGAATTCGTCAAAGCTTCATTAACAAAAGCAACTGGAGCCTCAATTTCTCCTCGCATATGTACATTTGGCATAGGTGCATACTGCAATCG CTACTTCTTGCAAATGCTGGCCCAAATCGCCAAGGGTCATTTCGATAGTGCTTTCGATGCAGATTCAGTTGATTCTCGGCTACAAAGACTATTCACAACT GCTTCATCTGTTGTCATGGCAAATGTAAGCATGGATTGTCTGGAACATCTTGATTCGCTCGAGTTGCTTCCGTGGTGTATTCCAGATTTAACAGCTGGAG CTCCATTGATGGTATCCGGAAGATGTGATGGGATTTTTCCAGAGTTAGTCAAAGTCACGGGGACTTGGTCAGATATGAGCAGTTTCACCATGGAGGTTAA AGTGAAAAGGACAAAAGATTTGCCACTGGATAGAGCTCTTGCTAGGACACAGATTGATTTGCTAACTGCTACGGCATGGCTATCACAAAACAAGGACCTT GAAGAGAAGGTAGCGAAGATGAGCATACAGAAAGGGGTTCCATCAGAATACACCCGTATGGTGTTGATCCACACTGACAAAGGAGAGAAACCCCCAGAGA CACACATGCTTACAGAGGTGTTCACGAAACTGAACTCAATGGGGCAGACAAAGGAAGCAGTGGACATTAACATCCTCCTAGGGAGCTTAGGCATTGGTTT CGGGGACCTGGCTGCAACAGCTCGGAACACTCCTTCGGGAATCGACGAGAAAAAGTCGCCAGATGCAGCGGAGAAGATGGCCAAGGCTGCTTTGAAATGC TGCGGTAGGGTGACGGATCGAGTGTGCTGTTTGTGCTTCATCAATGCTTGTTCATACACCAGCAACCAATGCTCCATTGTGTTCTCTCAAATCTGTGCTG CTCTTGCTTGCTTTGAGTGCATCAGCTGCTGCTATGAGCTTTGTGCTTGTGAATAG
AA sequence Show only first row Show all	>Lus10013159 pacid=23164149 polypeptide=Lus10013159 locus=Lus10013159.g ID=Lus10013159.BGIv1.0 annot-version=v1.0 MVNAVVTEPEAVDNPDVPSYQPYVHGCCDPPALIPLHMYGVEMEVDCCLDYARVSVGGRWRVHCLKGGRTCDCRVAVPMREKVRENFCVSVCGISLFCLD ARFLFDEMPLKGCWLKSLIAEQGTILSVEVEVAGRLYHSQLMNADDAEEFAKTSKASSSGVGRFLKGSIYTFRIPQVAGGSTVSVKVSWSQKLVYQRGQF SLEVPFSFPAYVNPPAVSKTSKREKILLNVSSGFSDEITCSCSSHALKELRREVGKMGFFYESEVKTWSVSNFSFSYTVCSEDLFGGVLLQSPYLRDFEE RQMFCLHLFPGNNQTRKAFRREVIFVVDISGSMKGDPLENTKSAISSSLYKLNEEDSFNIIAFNGEMYIFSSLMEPASQETVTRANEWLNETLVAQGGTD ILPPLKQAMKLLAETTNSIPLIFLITDGTVEDERDICEFVKASLTKATGASISPRICTFGIGAYCNRYFLQMLAQIAKGHFDSAFDADSVDSRLQRLFTT ASSVVMANVSMDCLEHLDSLELLPWCIPDLTAGAPLMVSGRCDGIFPELVKVTGTWSDMSSFTMEVKVKRTKDLPLDRALARTQIDLLTATAWLSQNKDL EEKVAKMSIQKGVPSEYTRMVLIHTDKGEKPPETHMLTEVFTKLNSMGQTKEAVDINILLGSLGIGFGDLAATARNTPSGIDEKKSPDAAEKMAKAALKC CGRVTDRVCCLCFINACSYTSNQCSIVFSQICAALACFECISCCYELCACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10013159 [exp]	0	1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	4.6	0.8628
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10008122 [exp]	6.7	0.7766
					Lus10009048 [exp]	9.8	0.8169
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036109 [exp]	20.9	0.7552
					Lus10025505 [exp]	23.1	0.8283
AT3G24460			Serinc-domain containing serin...		Lus10017728 [exp]	31.5	0.7834
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	35.2	0.8098
AT4G15130		ATCCT2	phosphorylcholine cytidylyltra...		Lus10000195 [exp]	43.3	0.7808
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10021133 [exp]	43.8	0.8111
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	44.4	0.8152

Compare expression of checked genes

Lus10013159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.