Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72490 157 / 4e-46 unknown protein AT1G17400 137 / 2e-38 unknown protein AT1G19115 64 / 4e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008123 [exp] 387 / 5e-136 AT1G72490 200 / 2e-62 unknown protein Lus10015679 [exp] 222 / 9e-70 AT1G72490 239 / 1e-76 unknown protein Lus10037689 [exp] 213 / 2e-67 AT1G72490 246 / 9e-81 unknown protein Lus10039921 [exp] 45 / 2e-05 AT1G17400 80 / 2e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068300 [exp] 214 / 1e-68 AT1G72490 279 / 2e-94 unknown protein Potri.001G166700 [exp] 206 / 3e-65 AT1G72490 269 / 2e-90 unknown protein Potri.006G140100 [exp] 100 / 5e-25 AT1G72490 143 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013160 pacid=23164184 polypeptide=Lus10013160 locus=Lus10013160.g ID=Lus10013160.BGIv1.0 annot-version=v1.0 ATGCAAACCAAGCTAAGTGGCAAACAAGGAAACAGTAATAGTAGAAAACCAACCACAATTGCTCCATCTTCTCATTCCAAGAGCCAAGAGTGTAGAGAGG AATTTAGTGATTGGCCACATGGGTTACTAGCAATTGGAACCTTTGGCATCAAAGACACCACCACCACCACCAATGATGGTGAAGATATCCAACAAGTTGT TGATGAGGTATGTGACAAAGATTCCATGTCTTTCGTAGATGATTTCCAAGATTTCGATCCTGCGGAGATCGAGAAGTTGCAAAAGGAGCTTAACAATTTG TTGACGCATAAGTTAAACTCGAAAAAAGACAAGGAGTCTGTTGTGGACTTTCCACTAAATAGGTTTCTGAACTGCCCGTCGAATTTGGAGATTGAAAGGA GGCTGAACACAGAAGTCACTGATAATCATGTCGGTCCATCAGATGGACAACACGATAATGACATTGAGAGGACGATTAGCGTCATACTTGGCAAATGTAA AGACATTCAAGCCAAGAAGAAAGAAAATAAGAACATTAAGAAGAAATCGATTTCTTTCCTCCTTAAGAAGATGTTTATTTGTTCAAGTGGGTTTGCTCCT CAACCTAGCTTGAAGGATACTCTCGGTGAGTCACGAATGGAGAAGCTTCTAAGAACATTGATGCACAAGAGAATGAGCCCTCAAAATGGTGCATCCTCCA TCAATAGATACATCAACCACAAACAACAAGAAGAAAATGAGGGGCAAAACAGTCGGAAAACTAGGGATGATCATGAATATTGTAGCAAATGGGTGAAAAC TGATTCCAACTGTGAGTACTCCATCCATCATCTCTTCCCTCTTTTGCCATTTGAATTGATCATAATCACCGTCATTGTTCATCGTTAA
AA sequence Show only first row Show all	>Lus10013160 pacid=23164184 polypeptide=Lus10013160 locus=Lus10013160.g ID=Lus10013160.BGIv1.0 annot-version=v1.0 MQTKLSGKQGNSNSRKPTTIAPSSHSKSQECREEFSDWPHGLLAIGTFGIKDTTTTTNDGEDIQQVVDEVCDKDSMSFVDDFQDFDPAEIEKLQKELNNL LTHKLNSKKDKESVVDFPLNRFLNCPSNLEIERRLNTEVTDNHVGPSDGQHDNDIERTISVILGKCKDIQAKKKENKNIKKKSISFLLKKMFICSSGFAP QPSLKDTLGESRMEKLLRTLMHKRMSPQNGASSINRYINHKQQEENEGQNSRKTRDDHEYCSKWVKTDSNCEYSIHHLFPLLPFELIIITVIVHR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72490			unknown protein		Lus10013160 [exp]	0	1
					Lus10022893 [exp]	1.0	0.8650
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	2.0	0.8531
					Lus10027526 [exp]	2.8	0.7642
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	3.0	0.8285
AT5G52790			CBS domain-containing protein ...		Lus10027528 [exp]	3.7	0.7800
AT1G65000			unknown protein		Lus10026159 [exp]	3.9	0.7014
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	10.0	0.7961
					Lus10022179 [exp]	11.6	0.6505
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	13.4	0.7327
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10005334 [exp]	14.5	0.7313

Compare expression of checked genes

Lus10013160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.