Plant FIBer expression Database

Lus10013161 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14080 180 / 3e-60 Small nuclear ribonucleoprotein family protein (.1.2)
AT1G19120 161 / 8e-53 Small nuclear ribonucleoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008124
[exp]
199 / 9e-68 AT3G14080 236 / 3e-82 Small nuclear ribonucleoprotein family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G068400
[exp]
190 / 3e-64 AT3G14080 234 / 3e-81 Small nuclear ribonucleoprotein family protein (.1.2)
Potri.001G166600
[exp]
189 / 1e-63 AT3G14080 233 / 9e-81 Small nuclear ribonucleoprotein family protein (.1.2)
Potri.001G278000
[exp]
36 / 0.0006 AT1G65700 146 / 3e-47 Small nuclear ribonucleoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10013161 pacid=23164135 polypeptide=Lus10013161 locus=Lus10013161.g ID=Lus10013161.BGIv1.0 annot-version=v1.0
ATGTCTTGGGCAGGGCCGGAAGATGTCTACCTATCGACTTCTCTCGCCAGCTACCTGGATACAAATGCTGTTCTTGAGGGTGCATGTGAAAGGTTGATTG
TTGGTGATCTTTACTGCGATATACCATTAGGTCTCTACGTAATTCGGGGAGAAAATGTAGTTCTAATCGGGGAGTTGGATCTGGAAAGGGAGGAGCTTCC
TCCACACATGACTCGTGTCTCGACCGCGGAAATTAAGAGGGCACAGAAAGCAGAAAGGGAAGCTTCGGATTTGAAGGGCACTATGCGGAAGAGAATGGAG
TTCCTCGATCTCGATTAG
AA sequence
>Lus10013161 pacid=23164135 polypeptide=Lus10013161 locus=Lus10013161.g ID=Lus10013161.BGIv1.0 annot-version=v1.0
MSWAGPEDVYLSTSLASYLDTNAVLEGACERLIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSTAEIKRAQKAEREASDLKGTMRKRME
FLDLD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G14080 Small nuclear ribonucleoprotei... Lus10013161
[exp]
0 1
AT1G07070 Ribosomal protein L35Ae family... Lus10021121
[exp]
7.6 0.8042
AT5G46850 unknown protein Lus10040093
[exp]
8.2 0.7025
AT3G57930 unknown protein Lus10031233
[exp]
9.2 0.7102
AT2G47640 Small nuclear ribonucleoprotei... Lus10013840
[exp]
9.7 0.7608
AT5G13470 unknown protein Lus10005318
[exp]
10.8 0.7088
AT5G41685 Mitochondrial outer membrane t... Lus10004754
[exp]
11.2 0.7203
AT5G27440 unknown protein Lus10041604
[exp]
15.2 0.7168
AT5G12080 ATMSL10, MSL10 mechanosensitive channel of sm... Lus10011954
[exp]
21.6 0.7254
AT2G21240 BBR_BPC BPC4, BBR/BPC4,... basic pentacysteine 4 (.1.2) Lus10042056
[exp]
21.6 0.6998
AT4G00390 GeBP DNA-binding storekeeper protei... Lus10018859
[exp]
21.6 0.7406

Lus10013161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.