Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72470 717 / 0 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 664 / 0 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 638 / 0 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 404 / 2e-135 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G52340 354 / 1e-116 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 349 / 7e-116 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G58430 334 / 9e-109 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G13150 333 / 7e-108 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT3G29400 328 / 3e-106 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G13990 313 / 7e-100 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008126 [exp] 880 / 0 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 400 / 7e-135 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10016764 [exp] 396 / 3e-132 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10031956 [exp] 368 / 3e-121 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 366 / 2e-120 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10043432 [exp] 338 / 4e-110 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10004917 [exp] 330 / 6e-107 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015757 [exp] 330 / 1e-106 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10021283 [exp] 329 / 1e-106 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166400 [exp] 808 / 0 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 800 / 0 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 408 / 4e-137 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 405 / 9e-136 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093966 [exp] 365 / 2e-120 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.017G068000 [exp] 365 / 8e-120 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.010G241800 [exp] 355 / 2e-116 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.008G017800 [exp] 354 / 2e-116 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.001G060700 [exp] 347 / 3e-113 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.019G124000 [exp] 345 / 7e-113 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10013163 pacid=23164189 polypeptide=Lus10013163 locus=Lus10013163.g ID=Lus10013163.BGIv1.0 annot-version=v1.0 ATGATCTCCGCCGGATACCTCCGCGAGTGCATCCAAGTCTACGGCAGCGTACGAAAATCCGCCGTCGATTCCAGCTTCCGCCGGCTAGGAATCGAAAAGC TCAGCATCGGAGATATCCAGCGGCTGGAGTGGGACGCACTGGAGAGCAAGATCCGGCGCTGGATTCGCGCCGCAAAAGTCTGCGTCAGAATCTTATTCGC CAGCGAAAAAAAGCTCTGCGAGCAGATTTTCGAATCCGTCGGATCCTCCGTCGACGACGCTTGCTTCGTCGAGACAGTAAAAGGGCCCGCCGTGCAGCTC TTCAACTTCGCCGAAGCAGTAAGCATCAGCAGAAGATCGCCGGAGAAAATGTTCAAGATCCTCGATCTGCACGACGCCCTGGTCGATCTGATGCCCGATA TCGAATCGGTCTTCGGTTCGAAATCGGCCGATTCAATCCGAGTCCAGGCTGCTGAGATTTTATCACGACTAGCTGAAGCTGCTAGAGGAATACTATCCGA ATTCGAAAATGCTGTTCTTCGAGAGCCGTCGAAAGTCGCAGTCCCGGGAGGAACGATCCATCCATTAACAAGGTATGTAATGAACTACATCAGCTTGATT TCGGATTACAAGCAGACGTTAATTGAGCTTATAATGTCGAAGCCATCAACCGGTTCGAGATACTCCGGCGATCCCACCACTCCCGATATGGAATTCGCCG AACTCGAAGGAGCCAAAACTCCACTAGCCTTACATTTGATTTGGATCATTGTGATTCTGCAATTCAATCTAGATGGAAAATCCAAGCTTTACAAAGATAC ATCATTAGCACATTTGTTCTTGATGAACAATGTTCATTACATTGTTCAAAAGGTGAAAGGCTCGGCCGAACTTAGAGAAATGATCGGAGACGATTATCTG CGGAGGCTGACTGGGAAGTTCCGGCAATCTGCGACGAATTACCAGAGAGCAACTTGGGTAGGGGTTTTGTATTGCTTGAGAGATGAAGGTTTGCACGTCA GTGGGAGTTTTTCGTCCGGTGTTTCGAAGAGTGCTTTGAGAGAGAGGTTTAAGAGCTTCAATGCTATGTTTGAAGAAGTTCATCGGACTCAAGCTACGTG GTTGATCCCGGACACGCAGCTGAGGGAAGAGCTAAGGATTTCAATCTCGGAGAAGTTGCTTCCGGCTTATCGGTCTTTCTTGGGACGGTTCAGGAGTCAT ATTGAGAGCGGTAGGCATCCGGAGAACTATATCAAGTATTCCGGGGAGGATCTGGAGAGTGCCGTCTTGGATTTCTTCGAAGGGTGTCCCGTTTCGCAGC ATTCGAGGAAGAGATCTCAGTGA
AA sequence Show only first row Show all	>Lus10013163 pacid=23164189 polypeptide=Lus10013163 locus=Lus10013163.g ID=Lus10013163.BGIv1.0 annot-version=v1.0 MISAGYLRECIQVYGSVRKSAVDSSFRRLGIEKLSIGDIQRLEWDALESKIRRWIRAAKVCVRILFASEKKLCEQIFESVGSSVDDACFVETVKGPAVQL FNFAEAVSISRRSPEKMFKILDLHDALVDLMPDIESVFGSKSADSIRVQAAEILSRLAEAARGILSEFENAVLREPSKVAVPGGTIHPLTRYVMNYISLI SDYKQTLIELIMSKPSTGSRYSGDPTTPDMEFAELEGAKTPLALHLIWIIVILQFNLDGKSKLYKDTSLAHLFLMNNVHYIVQKVKGSAELREMIGDDYL RRLTGKFRQSATNYQRATWVGVLYCLRDEGLHVSGSFSSGVSKSALRERFKSFNAMFEEVHRTQATWLIPDTQLREELRISISEKLLPAYRSFLGRFRSH IESGRHPENYIKYSGEDLESAVLDFFEGCPVSQHSRKRSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	0	1
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042996 [exp]	1.0	0.9124
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	2.4	0.8641
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	2.8	0.9018
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10008126 [exp]	3.9	0.8742
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	5.7	0.8427
AT5G42050			DCD (Development and Cell Deat...		Lus10032412 [exp]	6.3	0.8675
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	6.6	0.8740
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	7.1	0.8513
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	10.1	0.8166
AT2G42760			unknown protein		Lus10007299 [exp]	10.2	0.8163

Compare expression of checked genes

Lus10013163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.