Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11040 1558 / 0 AtTRS120 TRS120 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008127 [exp] 2102 / 0 AT5G11040 1804 / 0.0 TRS120 (.1) Lus10002132 [exp] 47 / 1e-05 AT1G79440 56 / 9e-10 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022500 [exp] 1681 / 0 AT5G11040 1758 / 0.0 TRS120 (.1) Potri.006G259500 [exp] 1660 / 0 AT5G11040 1761 / 0.0 TRS120 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08626 [flax] [poplar] TRAPPC9-Trs120 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
Representative CDS sequence Show only first row Show all	>Lus10013164 pacid=23164134 polypeptide=Lus10013164 locus=Lus10013164.g ID=Lus10013164.BGIv1.0 annot-version=v1.0 ATGGAGCCGGACGTCAGCATCGAGACCTCGTGCATGATCCGGATCGCGGTTCTCCCAGTGGGCACAGTTCCGGCGAGTGTCCTCCGTGATTATTTCTCAA TGTTCACCCGGCACAATACGATTCCGCTCTCGGCAATCAGCTCTTTCTACACTGAGCACCAGAAATCCCCTTTCGCACTCCAGCCGTGGGACACTGGATC CATCCGCTTCAAGTTCTTGCTCGGCGGGGCTCCTGCAAGCCCCTGGGACGACTTCCAGTCCAACAGGAAGATTCTCGCCGTCATCGGGCTCTGCCACTGC CCTTCATCGCCTGATCTTGATTCAGCAGTCGAGCAATTCACTGCCGCCTGTAAGAGTTACTCCTCAGCATTGGTCCAGCGGTGCTTCGCTTTCTGTCCTT GTGATTCTCAGCTGGAGGACGGTGTGAAGAAAGAGGACGTTCTCAGATTGTTCCCTCCTGCTGATCAGCAGACGCTGGATATCCATCTCCATACCATGAT GCAGGAAATTGCTGCTTCCTTGCTGATGGAATTTGAAAAGTGGGTGCTCAAGGCTGAATCTGCTGGAACTATCCTCAAGACGCCTTTGGATTCTCAAGCC AGTCTCAGTTCAGAAGAGGTTATCAAGGCCAAAAAGAGAAGACTTGGCCGAGCCCAGAAGACCATTGGGGATTACTGTTTGTTGGCTGGATCACCAGTTG ATGCAAGTGCTCATTATTCTACTGCATTAGAGCTTGCCAGGCTGACCGGGGATTTGTTCTGGTATGCTGGTGCCCTTGAGGGCAGCATTGATCGTGTCGG CCACGTCGATGCTGTATTAGTGGACGAAGTTAAGTATCAATACAACACTGTGATCATGCAGTATAGGAAGTCATTTATCCAAGACAATGCTCAAAGAGTT TCTCCTTTGAGCTTTGAACTTGAAGCTACTTTAAAGTTAGCAAGATTTCTCTGCAGAAGAGAGCTGGCCAAGGATGTTGTAGAGTTGTTGACCAGTGCTG CAGATGGTGGAAAATCTTTAATTGATGTTAATGATAGACTTGTTCTATATGTTGAAATTGCTCGGTTATTTGGGACACTTGGTTACCAGAGGAAGGCCGC CTTTTTCTCAAGGCAGGTTGCACAATTGTATCTTCAACAAGACAACAGGTTGGCTGCTACAAGTGCTATGCAAGTGTTAGCGATGACTACAAAAGCATAT CGTGTTCAGAGCAGAGCATCAGTATCTGATCCTCAAACAAAAAAACAAACTGGGCCGATTCAGACTGATAGTGGGAAAATGAATCATCACTTGATCGTAT CGTTATTTGAATCACAATGGAGCACGCTGCAGATGGTAGTGTTGAGAGAGATACTGCTATCTTCTGTTAGAGCAGGTGATCCACTTGCTGCGTGGAGCGC TGCTGCTCGGCTACTGAGACAATACTATCCACTAATTACACCGCCAGGACAGAATGGCCTTGCTAGTGCCCTGAATAACTCAGCTGAAAGGCTACCTTCT GGAACTCGCTGTGCTGATCCTGCTTTGCCTTTTGTGAGGCTGCATTCTTTTCCACTTCATCCATCTCAAACGGACATTATCAAGCGGAATCCTGGTAGAG AAGATTGGTGGGCTGGATCTGCTCCTTCAGGACCTTTTATCTATACCCCATTCAGCAAAGGGGAGTCAACTGATACTAGCAAGCAGGAGCTGGTTTGGAT TGTCGGAGAACCAGTCCAGGTTTTGGTGGAGCTCGCAAACCCATGCGGCTTTGATTTGAGGGTTGATAGTATATATCTGACTGTGCATTCAGGTTGCTTT GATGCTTTCCCAATAAGTGTGGATCTTCCTCCCAACTCTTCAAAGGTGATCACCTTATCTGGAATTCCGACTGCTATGGGGCCAGTAACAATCCCAGGAT GTACGGTTCATTGCTTTGGTGTCATCACAGAACATCATTTCAGGGATGTCGATAACCTGCTCCTTGGGGCAGCACAAGGACTTGTACTTTCTGATCCTTT CAGATGCTGTGGATCTGCCAAGTTGAGAAATTTATCTGTTCCAAGTATTTCTGTAGTGCAACCCTTGCCATTACTAGTCTCGCAGGTTGTAGGCGGTGAT GGGGCCATAATTTTGTATGAAGGTGAAATACGTGATATTTGGATAAGCCTCTCAAATGCAGGAACTGTTCCAGTTGAGCAAGCACATATATCCCTCTCTG GAAAGAACCAAGATTCCATCATCTCAATACCTTATGAGACCTTAAAATCTGTTCTTCCATTGAAACCTGGAGCAGAGGTGATCCTACCACTGACTTTGAA AGCTTGGAAGCTCAGTCAGATCGACCTCGATATTGGTGCTGGAAGAGCAATCTCTGGAAGCATTGGACGGCAGTTTAAGGATGCTAGTGGCCCTACTTTA TTGATCCATTATGCAGGGCCATCGACAGATTATCTAGATATTGCTACGAAAGGTTCTACTTTGCCTCCGGGAAGACGCTTGGTTCTCCCGTTGCATGTTT GTGTGTTGCCAGGTATGTCTCTTGTAAAAGCTCGTCTGCTTTCAATGGAAATTCCAGCACATATTGGAGGTGATCATCCTAAACTTGTTCCCGAGGGGCA TGATGAGCCTAGCAAAGAAGTAACAGAGTCCGAAAGGAAGATAGAGAGATTGGTGAAGATTGACCCTTACAGAGGAAGCTGGGGATTGCGGTTTCTAGAA CTAGAATTGTCTAATCCAACCGACGTGGTGTTTGAGATTGGTGTTTCTGTTCAGCTGGATGACAGTGAAGATAACCCTGGTGTTGATGAAGACGGTGAAT ATGGTTATCCAAAAACTAGGATCGATCGGGACTATTCCGCAAGGGTTCTAATACCGCTAGAGCACTTTAAATTGCCTATCCTTGATGATTCCTTTTTCAT GAAGGAATTTCTGAACGAGGGTTCATCAACTAGTAGTAGCAGAAGTCCAACCTTCTCTGAAAGGAACACAAAAGCTGAATTGAATGCTTCAATTAAAAGC CTGATATCAAGAATAAAAGTCAGGTGGCATTCGGGAAGGAACAGCTCTGGGGAATTGAATATTAAGGATGCTGTACACACTGGACTTGAGACATCAGTTA TGGACGTCTTGCTTCCAGATCCATTAACGTTCGGTTTTAGGCTTACCCGGAGCAGCGAAGAACCATCCGATGACTCGTCAGTCTCCACAGATTCTTTTTC GTTTGGGAAGCTGGAGAGAATTGTGTTGAAGGTGGGAAGTCGACTGTTCTGTGGGCCGGTTCCGCCGTTGAAAGAATCAAAGCACGAGTTTTCACTGTAC TTCCTGGTGCCGGGGGAGTACACATTGGTAGCTGCTGCAGTAATAGAAGATGCAAATGATGTGCTCAGAGCTCGTGCTAAAACCCAGTCACCAGAGGAGC CGATCTTTTGTCGAGGCCCTCCGTTTCATGTTCGTGTCTTGGGGACTGCATGA
AA sequence Show only first row Show all	>Lus10013164 pacid=23164134 polypeptide=Lus10013164 locus=Lus10013164.g ID=Lus10013164.BGIv1.0 annot-version=v1.0 MEPDVSIETSCMIRIAVLPVGTVPASVLRDYFSMFTRHNTIPLSAISSFYTEHQKSPFALQPWDTGSIRFKFLLGGAPASPWDDFQSNRKILAVIGLCHC PSSPDLDSAVEQFTAACKSYSSALVQRCFAFCPCDSQLEDGVKKEDVLRLFPPADQQTLDIHLHTMMQEIAASLLMEFEKWVLKAESAGTILKTPLDSQA SLSSEEVIKAKKRRLGRAQKTIGDYCLLAGSPVDASAHYSTALELARLTGDLFWYAGALEGSIDRVGHVDAVLVDEVKYQYNTVIMQYRKSFIQDNAQRV SPLSFELEATLKLARFLCRRELAKDVVELLTSAADGGKSLIDVNDRLVLYVEIARLFGTLGYQRKAAFFSRQVAQLYLQQDNRLAATSAMQVLAMTTKAY RVQSRASVSDPQTKKQTGPIQTDSGKMNHHLIVSLFESQWSTLQMVVLREILLSSVRAGDPLAAWSAAARLLRQYYPLITPPGQNGLASALNNSAERLPS GTRCADPALPFVRLHSFPLHPSQTDIIKRNPGREDWWAGSAPSGPFIYTPFSKGESTDTSKQELVWIVGEPVQVLVELANPCGFDLRVDSIYLTVHSGCF DAFPISVDLPPNSSKVITLSGIPTAMGPVTIPGCTVHCFGVITEHHFRDVDNLLLGAAQGLVLSDPFRCCGSAKLRNLSVPSISVVQPLPLLVSQVVGGD GAIILYEGEIRDIWISLSNAGTVPVEQAHISLSGKNQDSIISIPYETLKSVLPLKPGAEVILPLTLKAWKLSQIDLDIGAGRAISGSIGRQFKDASGPTL LIHYAGPSTDYLDIATKGSTLPPGRRLVLPLHVCVLPGMSLVKARLLSMEIPAHIGGDHPKLVPEGHDEPSKEVTESERKIERLVKIDPYRGSWGLRFLE LELSNPTDVVFEIGVSVQLDDSEDNPGVDEDGEYGYPKTRIDRDYSARVLIPLEHFKLPILDDSFFMKEFLNEGSSTSSSRSPTFSERNTKAELNASIKS LISRIKVRWHSGRNSSGELNIKDAVHTGLETSVMDVLLPDPLTFGFRLTRSSEEPSDDSSVSTDSFSFGKLERIVLKVGSRLFCGPVPPLKESKHEFSLY FLVPGEYTLVAAAVIEDANDVLRARAKTQSPEEPIFCRGPPFHVRVLGTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	0	1
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	1.7	0.9441
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	1.7	0.9563
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	2.2	0.9405
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	3.5	0.9439
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	4.5	0.9457
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	5.5	0.9217
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	6.2	0.9183
AT5G49810		MMT	methionine S-methyltransferase...		Lus10042407 [exp]	7.1	0.8793
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	7.5	0.9291
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	7.7	0.9321

Compare expression of checked genes

Lus10013164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.