Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20690 322 / 9e-101 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 308 / 1e-95 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 250 / 8e-74 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 231 / 2e-66 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 224 / 4e-64 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 223 / 2e-63 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 221 / 3e-63 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT2G26730 204 / 1e-56 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 200 / 2e-55 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 189 / 3e-51 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008128 [exp] 546 / 0 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 417 / 3e-141 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 421 / 8e-139 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 354 / 2e-112 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 307 / 2e-98 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 284 / 3e-87 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10037687 [exp] 245 / 6e-76 AT1G72460 212 / 4e-64 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 241 / 5e-70 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 234 / 1e-67 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166300 [exp] 503 / 8e-170 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 333 / 4e-105 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 316 / 8e-99 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 245 / 6e-72 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 244 / 9e-72 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 232 / 9e-67 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 225 / 2e-64 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 221 / 4e-63 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 217 / 1e-61 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 210 / 2e-61 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013165 pacid=23164146 polypeptide=Lus10013165 locus=Lus10013165.g ID=Lus10013165.BGIv1.0 annot-version=v1.0 ATGACCTTGGATTGGCTCTCCCTCCGGCAGCAATCCATCCTTTTTTACCTCTTCTTCTTCCTCATCCCCTCCTCCTCCGCCGCCGCCGTCTCCGATTCCG ACGCCCTACTCCGCCTCAAGAAATCCTTCCTAAACGACAGAGCTCTCATCTCTTGGGACCCTGCCTCACCTCCTTGCAAATCCAGGATCCGCTGGCATGG CGTCTTCTGCTCCAAGCACGGCAAGGTCACCGGACTCCGCCTCGAGGATCTCGGATTATCCGGCGAGATCGACGTCGACGCTCTCCTCCAGATCCCCGGC CTGCGAATGGTCAGCTTCGCCAACAACTCCTTCTCCGGTGATATCCCGCGGATCAACCGGCTAGCCTACCTCAAGGCGGTTTACCTTACGGGGAACAACT TCTCCGGCCAGATCCCGCGGGGATACTTCTTCAAGATGGCGGGCTTGAAGAAGCTCTGCCTGGCGAAAAATGGATTCTCCGGATTGATTCCAACTTCCCT CACCATGGTCTCCAATCTTATCGTACTCCGCCTGGATAGCAACCGGTTCTCCGGGCAGATCCCTGACCTGGAGCTCAAGAAATTGAAGCGATTCGACGTT TCTAATAACCCTAATTTGTTCGGCGAGATCCCTAAGGGGCTTGCCAAATTCGAATCAACGGCGTTCCGAGGAAACCCTGACCTCTGCGGTGAGGTAATCG CGAAGGAATGCCAGCTCCCGGCCGAGAGCAAGGCGGCGGGGGCAGCCACGTCGTCGGAAGGGATCCAGAACAACCCTAACGCGACCGCCGTCGGAATTGG CCAGACCAATTTCAAGAAGACGACGGCCGGAATCACGGCCCTAGGCGTCCTTTTGCTTATAACATTGGTTGTGCTTGTTCTCAAATTGCGTAGCAAAGAT GACGACGATCACGGACGTTTGGGAACCTTAGGGGATCACCACCATATCGCCGGCGTCGGCGGCGGAAACCACGACGACGGGACGATCGAGGCCCGAGTCT CGACGCCGGCGGCGGTGGCGGTGTCGACGGCGACGGCGACGCGACTGCCTTCGGTTGATTCCGGCGTGTTAGCGCGGGGTAGGACGTCGAATGCTGCGGC GGTGGCGAAGGGAGGGGCGTTCGTGATGATGAACGAGGACAGGGGAGTTTTCGGGCTGTCGGATTTGATGAAGGCGGCCGCCGAGGCCTTGGGGAACGGA GGGTTGGGTTCATCGTACAAGGCGGTGCTGGCTGGAGGGACGGCGGTGGTGGTTAAGAGGATGAGGGAGATGGATGCTATGGGGAAAGACGGGTTCGAAT CTGAGATCAGAATGCTCGGGAAGCTACGACACCCGAACGTGCTTACGCCGTTGGCGTTCCATTACCGTAAGGATGAGAAGTTGCTCATTTACGAGTTCGT CCCCACCGGCAGCTTGCTCTTCCTGTTGCATGGTGAACGAGTGCCCGGGCATCCAGGACTGAACTGGGCAGCACGACTCCGAATCATAAAAGGAGTAGCT CGAGGGTTAACCTACATCCACTCGGAGCTAGCAGGCTCGAATCTACCGCACGGGAACTTGAAATCCAGCAACATACTCGTAGGTCCGGACAACGAACCGA GGATTTCCGAGTATGGATTCAGCTCCTTAGTCAATGCCGCGGTCATCTCGCAGGCATTGTTCGCATACAAAACCCCCGAAGCAACGACAGGTCACGTGTC CGCGAAATCCGACGTGTTCTGCCTAGGAATCCTCATCCTGGAAATCCTGACAGGCAAGCTTCCCTGCCAGTACTCCATCAGTGGGGCTGCGGGGGCGAAT TTGGTCCAATGGGTGGGTTCGGCGGTAGGCAACGGGAAGGAAACAGAGTGCTTGGATCCTGAGATCGGAGGGTTGACGTCTTCGGTTGGACCGATGTTGA AGCTGATGGAGGTTGGGTTCCTCTGTTGCCGCGATGTTCCTGAGGACAGACTCGACCTGAGAGAAGCGGCAAGGAGGATCGACGAGATATAA
AA sequence Show only first row Show all	>Lus10013165 pacid=23164146 polypeptide=Lus10013165 locus=Lus10013165.g ID=Lus10013165.BGIv1.0 annot-version=v1.0 MTLDWLSLRQQSILFYLFFFLIPSSSAAAVSDSDALLRLKKSFLNDRALISWDPASPPCKSRIRWHGVFCSKHGKVTGLRLEDLGLSGEIDVDALLQIPG LRMVSFANNSFSGDIPRINRLAYLKAVYLTGNNFSGQIPRGYFFKMAGLKKLCLAKNGFSGLIPTSLTMVSNLIVLRLDSNRFSGQIPDLELKKLKRFDV SNNPNLFGEIPKGLAKFESTAFRGNPDLCGEVIAKECQLPAESKAAGAATSSEGIQNNPNATAVGIGQTNFKKTTAGITALGVLLLITLVVLVLKLRSKD DDDHGRLGTLGDHHHIAGVGGGNHDDGTIEARVSTPAAVAVSTATATRLPSVDSGVLARGRTSNAAAVAKGGAFVMMNEDRGVFGLSDLMKAAAEALGNG GLGSSYKAVLAGGTAVVVKRMREMDAMGKDGFESEIRMLGKLRHPNVLTPLAFHYRKDEKLLIYEFVPTGSLLFLLHGERVPGHPGLNWAARLRIIKGVA RGLTYIHSELAGSNLPHGNLKSSNILVGPDNEPRISEYGFSSLVNAAVISQALFAYKTPEATTGHVSAKSDVFCLGILILEILTGKLPCQYSISGAAGAN LVQWVGSAVGNGKETECLDPEIGGLTSSVGPMLKLMEVGFLCCRDVPEDRLDLREAARRIDEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20690			Leucine-rich repeat protein ki...		Lus10013165 [exp]	0	1
AT3G11770			Polynucleotidyl transferase, r...		Lus10036491 [exp]	19.3	0.6496
					Lus10032106 [exp]	48.5	0.6124
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	50.6	0.6711
AT2G43870			Pectin lyase-like superfamily ...		Lus10011419 [exp]	50.8	0.6911
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	54.0	0.6990
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10018983 [exp]	60.0	0.6805
					Lus10012561 [exp]	64.7	0.6190
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009417 [exp]	74.6	0.6634
					Lus10025503 [exp]	115.0	0.6602
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	160.4	0.6490

Compare expression of checked genes

Lus10013165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.