Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74950 99 / 6e-25 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT1G19180 99 / 1e-24 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G72450 76 / 5e-16 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) AT5G20900 67 / 2e-13 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT1G17380 63 / 2e-11 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT1G70700 56 / 4e-09 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT5G13220 53 / 3e-08 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT3G43440 51 / 1e-07 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT3G17860 49 / 2e-06 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 46 / 1e-05 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008129 [exp] 314 / 1e-108 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10039911 [exp] 108 / 4e-28 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10027648 [exp] 106 / 4e-27 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10027639 [exp] 54 / 2e-08 AT5G20900 107 / 8e-29 jasmonate-zim-domain protein 12 (.1) Lus10011929 [exp] 54 / 2e-08 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10035804 [exp] 52 / 9e-08 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1) Lus10014700 [exp] 52 / 2e-07 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10000490 [exp] 47 / 9e-06 AT4G14720 184 / 8e-55 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10036584 [exp] 45 / 2e-05 AT1G74950 64 / 9e-12 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068900 [exp] 120 / 8e-33 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.006G139400 [exp] 111 / 3e-29 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.001G166200 [exp] 105 / 3e-27 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.006G217200 [exp] 76 / 2e-16 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.018G047100 [exp] 69 / 5e-14 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.003G165000 [exp] 56 / 2e-09 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.001G062500 [exp] 49 / 4e-07 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.012G044900 [exp] 46 / 1e-05 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 45 / 2e-05 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 45 / 2e-05 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10013166 pacid=23164143 polypeptide=Lus10013166 locus=Lus10013166.g ID=Lus10013166.BGIv1.0 annot-version=v1.0 ATGGAGAAGCCAGGGAGTAGTTTTGCTCAGACGTGTAACCTTCTCAGCCAGTTTTTGAAGTCCGGTAAAGCGAATCTAGGAGATATCAACCTTGCTGCTA AGCTCGGTCATCATCAGAGTTTCAAATCAGGCGGAGCACCAACGACGACGCTGAATCTTCTGCCGAGCATCGGAAACGACGACGGAAACTCGAAGAAAGC TAGAGATCTGATGGATTCGTTGCCGCAGTTTGTAGCGGCTGGATCTCCTCCGGCTATGGAAACTAAAGGCTCTGCTCTTCCTACTCCAGCTCAGATGACG ATTTTCTACGGAGGGAGAGTGATTGTGTTCGATGATTTCCCGGCGGAGAAGGCGAAGGAGGTTATGGCGTTGGCGTCTGGAAATGGGGCGATCATCAAAA ACAACAACAGCAATAATAATAATTCGTCTGATGAGCGTAACGTTAACTCATCGGCTTCAGCTGGATCCGGCGCGGCTTCCTCGTCGTCTTCCCCTGAAGC GAGTCAAATTGAGAGGCTACCTCTCCGGCCGATTCCGTCCGATTTGCCGATTGCTAGGAAGGCTTCGCTTCACCGGTTTCTGGAGAAGAGAAAGGACAGA GTTACATCCAGAGGACCGTATCATTCCCCGAGTTCGGCGGCGGCGGCGGCGAAACCCGCCGGAGGTGCCGGGAGTAATAATAGCAACAACAAATGGCTTG ATCGGCAGATGAGCCAATCTTCGAAACAGCTGGAGCTTAGTTTATAG
AA sequence Show only first row Show all	>Lus10013166 pacid=23164143 polypeptide=Lus10013166 locus=Lus10013166.g ID=Lus10013166.BGIv1.0 annot-version=v1.0 MEKPGSSFAQTCNLLSQFLKSGKANLGDINLAAKLGHHQSFKSGGAPTTTLNLLPSIGNDDGNSKKARDLMDSLPQFVAAGSPPAMETKGSALPTPAQMT IFYGGRVIVFDDFPAEKAKEVMALASGNGAIIKNNNSNNNNSSDERNVNSSASAGSGAASSSSSPEASQIERLPLRPIPSDLPIARKASLHRFLEKRKDR VTSRGPYHSPSSAAAAAKPAGGAGSNNSNNKWLDRQMSQSSKQLELSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	0	1
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	1.0	0.9843
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	3.9	0.8778
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	5.5	0.8502
AT5G18150			Methyltransferase-related prot...		Lus10019138 [exp]	5.5	0.8583
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	5.7	0.8761
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	6.2	0.9027
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	7.3	0.8655
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	8.0	0.8499
AT3G18950			Transducin/WD40 repeat-like su...		Lus10027944 [exp]	8.4	0.7826
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	9.2	0.8547

Compare expression of checked genes

Lus10013166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.