Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14110 320 / 9e-111 FLU FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G16760 48 / 6e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008131 [exp] 489 / 4e-176 AT3G14110 333 / 8e-116 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10015677 [exp] 364 / 4e-127 AT3G14110 312 / 8e-108 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10037686 [exp] 348 / 7e-121 AT3G14110 304 / 2e-104 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166000 [exp] 345 / 5e-119 AT3G14110 371 / 4e-129 FLUORESCENT IN BLUE LIGHT, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.010G007000 [exp] 44 / 0.0001 AT3G16760 267 / 6e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013168 pacid=23164129 polypeptide=Lus10013168 locus=Lus10013168.g ID=Lus10013168.BGIv1.0 annot-version=v1.0 ATGGCGGTGGCAATCCGCTGCTGTGCTTCTTCGCCGCCGGACCTCTTGGCCTCTCAAAGATCACTTCTTTCCGGGAAGCTGCCTTGTGGTGCATTACTCA AAGTAGACAAGTTAGCCTTGTTATCATCTAGGTATGCACCACCAGCCATACAGTCTATCGCTCGGCTTAACTCAAAGCATCTGCCGAATCGACAACATGA GGACGTGCTACTTCGACGTTCGTCTGCTCATCAGGGGGGAACATTCTTTTTGCGATCCTCGGCGATTGGGCTGGTGACTAATGCTTTCATGACTGCTGAA GCCATGGCTCAAACATGTGAGGCCGCCGCGGACAACTCTTTCCTCAACATGCCCGTGTTGCTGTTTGTTGCACTGGTCGGGGCTACTGTTGGAGGGTTGC TCGCACGGCAGAGGAAAGGAGAATTGAAGCGTCTGAACGAGCAACTACGCCAAATCAACACTTCCCTAAGAAGACAAGCGAAGATCGAGTCATACGCCCC CAACCTAAGCTATGCTCCTGTGGGTAGCAGGGTCCAAGACGAAGTGATAGTCGACTCAAGGAAACAAGAACTCATTTCCCGGTTGAGAAGCGGGAAGAAC TACTTAAGGAACCAGGATCCGCAAAAGGCATCGGAGGAGTTCAAGATGGCGCTTAGCCTTGCTCAAGATTTGAAAGATCCTATTGAGGAGAAGAAGGCTG CAAGAGGCTTAGGAGCCTCCTTCCAAAGACAAGGGCAGTATCGCGAAGCAATCAAGTACCATTCGATGGTGCTGGAGATATCGAAGCGGGAAGGAGAAGA GTCTGGTAACACTGAAGCTTATGGAGCCATTGCAGACTGTTACACCGAGCTAGGGGATCTTGAGCAAGCTGGCAAGTTCTATGACGATTACATTGCTAGA CTCGAAACGGACTGA
AA sequence Show only first row Show all	>Lus10013168 pacid=23164129 polypeptide=Lus10013168 locus=Lus10013168.g ID=Lus10013168.BGIv1.0 annot-version=v1.0 MAVAIRCCASSPPDLLASQRSLLSGKLPCGALLKVDKLALLSSRYAPPAIQSIARLNSKHLPNRQHEDVLLRRSSAHQGGTFFLRSSAIGLVTNAFMTAE AMAQTCEAAADNSFLNMPVLLFVALVGATVGGLLARQRKGELKRLNEQLRQINTSLRRQAKIESYAPNLSYAPVGSRVQDEVIVDSRKQELISRLRSGKN YLRNQDPQKASEEFKMALSLAQDLKDPIEEKKAARGLGASFQRQGQYREAIKYHSMVLEISKREGEESGNTEAYGAIADCYTELGDLEQAGKFYDDYIAR LETD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10013168 [exp]	0	1
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	3.0	0.9686
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	3.7	0.9594
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	6.2	0.9565
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	10.5	0.9537
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	11.8	0.9539
AT3G12110		ACT11	actin-11 (.1)		Lus10001693 [exp]	13.2	0.9318
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	13.5	0.9518
AT3G15190			chloroplast 30S ribosomal prot...		Lus10041925 [exp]	14.1	0.9384
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	14.1	0.9523
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	15.1	0.9453

Compare expression of checked genes

Lus10013168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.