Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72390 726 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008132 [exp] 1723 / 0 AT1G72390 867 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165800 [exp] 971 / 0 AT1G72390 778 / 0.0 unknown protein Potri.003G069200 [exp] 949 / 0 AT1G72390 739 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12090 [flax] [poplar] Spt20 Spt20 family
Representative CDS sequence Show only first row Show all	>Lus10013169 pacid=23164196 polypeptide=Lus10013169 locus=Lus10013169.g ID=Lus10013169.BGIv1.0 annot-version=v1.0 ATGGGCGTCTCGTTTAAAGTCTCCAAAAAGGGTTCAAGGTTCCGTCCGAAACCTGTAGCTCAGCAAAAGGATGTTGCTTCCGATGATGAATCTGAAGTTC CCAAGGATGGGTCCTTGATTGGCGCCAGAAATCCTTCGTCCAAGAACAGGGCCGAGGGCACTTTTGCTGATGGTACTGATGGTCTATCGGATGTCTCGAG TATATCTGTCCGTGAGAACGAAGTTTCCTTCACTTTGAACCTCTATCCAGATGGATATTCTATTGGAAAAGTTTCGGAGAATGATATTGTGCACAGGGCT CCCCTTCAAGATGCTTCAAAGTTGCTGCACCCTTATGATAGGGCATCTGAAACTATATTCGTGGCAATTGAGTCTGGCTGGTTGCCGGGAGATATCCTGG ATGATATACCATGCAAGTACGTTAATGGAAGTCTAATATGTGAGATTCGAGATTATCGGAAGTGTGCTACTGAGCAAGGGTCTGCTATCACATCTACTGA TGTCCCTATCATAAATAAAGTGCGCCTAAAGATGTCATTGGAGAATGTAGTAAAGGATATTCCATTGATCTCAGATAACTCATGGACCTATGGGGATTTA ATGGAAGTGGAGTCCAGGATAGTGAAGGCTTTGCAGCCAGTGCTTTCTCTTGATCCCAAACCAAAATTGGATAGACTTTCTGCTAGTCCTCTTCCTTCCA AGCTTAATTTAAATCTGGCTAGTCTGCGGAGGAAAAGGTTGAGGCAGATACCGAATGTTACCGTGACATCTACAAGCAGACTCCATGGGAAGAAAGTTTG CATAGATCAAGTCCCGGAAAGCTCTAACAGTAGATTTTCTGACCCAAACATTATGGTGGGCAACATGATGCACCCGCATGTCCAGGGGAATCTAACAGCT CCAAATCTTGGTCAAGGAAACATGCCAGGTGGCAGTAGTCAGGCATTCCCTTTGGTTTCTTCTCAGCCAAGGTATCAACCGGGCGTTGGCTCAGGGCCTC TTGTTAATGTTTCGGCAGCTTCCCCGAGTGGACAAGATATGATGGTCACTTATAATGACAATGTAAATGCAAGTGCTTCAATGCATGGTAAAAGAGGAAA TCAAGATGGACAAATGTCACCATTAGCAAATAATAATAAGAGAGCGAGGATGACATCAGGTCCTGACGGCAAACAACAGCCACAAGTAGGACCAATTTCG GATAACCTCCAAGCGGCTGATATGAACTGGAAGAGTTCATTACTTCAGCAGCACATTATGGCAAGAGGAATGCAGCAGTACCCCAATGCAGGGATTCAAA AGTATCCACAGATGTTTGAAGGGGTTTTGAATCAGGGTGCTGGAACACCATTTTCTGCTGGACAATCGGCTTTGAGGTTTGGTCCAAAGGAAGAACTGTT TGAGTCAGAAAAGCTTGGTGGATCTGAACTGAATCAGGGAAAGAGTGATATGACAATAGAGAACAATTTGGTAAGTCTGGATCCACAGCAGTTGCGCCTA CATCAAAGACTTCCACAACATATGATGAGACCGAATTTTCCCCAGACGGGATGGAACAATCTCAGCCAAGACACAAAAAAGGAGGAACAACAACACCCAA AGAGAAAACCAGCACAAAGTCCCCGGTTGTCTGCAGGGACATTGGCTCAGTCTCCATTATCGTCAAGATCTGGGGAATACTCTGGTAACTCAGCTGGACC TCACATGGGAGGAGTTGCAGCAGTAACCTCTCTTGGATCGCAGAAGGACAAGTCAGCTGTTACCTCGCTTCCTGCCATTGCTGGGACTGCTTCTGCCAAG CGGAGGTCAAATTCGGTCCCAAAGAACTCTGCTATGAGTGGAGTTGCCTCTCCTGCAAGTGTTGGTAACATTAGTGGTTCATTGAATGCAAACAGTCCTA CAGTTGGAACACAATCTATGGCTGATCATGCCATTCTTGAAAGGTTTGCCAAGATTGAGGTTGTCGCTTCAAGGCATCAGCTTAGCCGTAAAAGGAATAA ACTAGATGACTACCCAAGGAAGCAAAATACGTATAATCCTCAGAATATTGCGGTTTGCCTATCCAATGCAGCGAATTATGAGGATTTCAAAGATGAAATT AAAGAAAGGCAATTATCGAAGTCACTTGTTGGTGGCAACATCAATGTTCTCAAGATAAGAGTTATGAATTTTATGCAAGGTGAACGAGTGCTGCAAGGAA ATGTTGTGACTTATGTCCCGAAGGCACGTGCTAGAATGATCATGATGGAGAAGTCGAATGATGGTACTGTGGCTATGCATTATGGAGACTTAGAGGATGG GGATGTTCTCTCTGCTGAGGAATATCTTCCTACATTGCCTAATACTCATTTTGCGGATTTGCTCGCACAGCAGTTCTGTACATTGATGAGTCGAGATGGT TATCTAGTGGAAAATCACATCGAACAGAAACCAACAAGGATGAATAATACCTCATCAGGCAGTCAACCTGGCGTATTCCCCAACAATGCAACAATGGAGA TGCAGCAGCAGTACAACGAATCCATGGCGGGTCAGACCTCAAATGATGTGAAGCCCACTCTTAGTGGCAACCCTTCGGTAAATTCGTCCCAGAACGCACC GGTAAATGCAAGGATGCTGCTTCCTGGGAACTCTCAGGCCTTACAGATGCCGGTGCCTCCAAGACCGCAGCAACTGGACCCACAACAATTAATCACACGA ATGCTGCCGGTCTGTCCATGTTGGGACAATGACGGAATGCAGCAGTACCCCAATGCAGGGATTCAAAAGTATCCACAGATGTTTGAAGGGGTTTTGAATC AGGGTGCTGGAACACCATTTTCTGCTGGACAATCGGCTTTGAGGTTTGGTCCAAAGGAAGAACTGTTTGAGTCAGAAAAGCTTGGTGGATCTGAACTGAA TCAGGGAAAGAGTGATATGACAATAGAGAACAATTTGGTAAGTCTGGATCCACAGCAGTTGCGCCTACATCAAAGACTTCCACAACATATGATGAGACCG AATTTTCCCCAGACGGGATGGAACAATCTCAGCCAAGACACAAAGAAGGAAGAACAACAACACCCAAAGAGGAAACCAGCACAAAGTCCCCGTTTGTCTG CAGGGACATTGGCTCAGTCTCCATTATCGTCAAGATCTGGGGAATACTCTGGTAACTCAGCTGGACCTCACATGGGAGGAGTTGCAGCAGTAACCTCTCT TGGATCGCAGAAGGACAAGTCCGCTGTTACCTCGCTTCCTGCCATTGCTGGGACTGCTTCTGCCAAGCGGAGGTCAAATTCGGTCCCAAAGAACTCTGCT ATGAGTGGAGTTGCCTCTCCTGCAAGTGTTGGTAACATTAGTGGTTCATTGAATGCAAACAGTCCTACAGTTGGAACACAATCTATGGCTGATCATGCCA TTCTTGATAGGTTTGCGAAGATTGAGATTGTCGCTTCAAGGCATCAGCTTAGCCGTAAAAGGAATAAACTAGATGACTACCCAAGGAAGCAAAATACGTA TAATCCTCAGAATATTGCGGTTTGCCTATCCAATGCAGCGAATTATGAGGATTTCAAAGATGAAATTAAAGAAAGGCAATTATCGAAGTCACTTGTTGGT GGCAACATCAATGTTCTCAAGATAAGAGTTATGAATTTTATGCAAGGTGAACGAGTGCTGCAAGGAAATGTTGTGACTTATGTCCCGAAGGCACGTGCTA GAATGATCATGATGGAGAAGTCGAATGATGGTACTGTGGCTATGCACTATGGAGACTTAGAGGATGGGGATGTTCTCTCTGCTGAGGAATATCTTCCTAC ATTGCCTAATACTCATTTTGCGGATTTGCTCGCACAGCAGTTCTGTACATTGGTATGTTAG
AA sequence Show only first row Show all	>Lus10013169 pacid=23164196 polypeptide=Lus10013169 locus=Lus10013169.g ID=Lus10013169.BGIv1.0 annot-version=v1.0 MGVSFKVSKKGSRFRPKPVAQQKDVASDDESEVPKDGSLIGARNPSSKNRAEGTFADGTDGLSDVSSISVRENEVSFTLNLYPDGYSIGKVSENDIVHRA PLQDASKLLHPYDRASETIFVAIESGWLPGDILDDIPCKYVNGSLICEIRDYRKCATEQGSAITSTDVPIINKVRLKMSLENVVKDIPLISDNSWTYGDL MEVESRIVKALQPVLSLDPKPKLDRLSASPLPSKLNLNLASLRRKRLRQIPNVTVTSTSRLHGKKVCIDQVPESSNSRFSDPNIMVGNMMHPHVQGNLTA PNLGQGNMPGGSSQAFPLVSSQPRYQPGVGSGPLVNVSAASPSGQDMMVTYNDNVNASASMHGKRGNQDGQMSPLANNNKRARMTSGPDGKQQPQVGPIS DNLQAADMNWKSSLLQQHIMARGMQQYPNAGIQKYPQMFEGVLNQGAGTPFSAGQSALRFGPKEELFESEKLGGSELNQGKSDMTIENNLVSLDPQQLRL HQRLPQHMMRPNFPQTGWNNLSQDTKKEEQQHPKRKPAQSPRLSAGTLAQSPLSSRSGEYSGNSAGPHMGGVAAVTSLGSQKDKSAVTSLPAIAGTASAK RRSNSVPKNSAMSGVASPASVGNISGSLNANSPTVGTQSMADHAILERFAKIEVVASRHQLSRKRNKLDDYPRKQNTYNPQNIAVCLSNAANYEDFKDEI KERQLSKSLVGGNINVLKIRVMNFMQGERVLQGNVVTYVPKARARMIMMEKSNDGTVAMHYGDLEDGDVLSAEEYLPTLPNTHFADLLAQQFCTLMSRDG YLVENHIEQKPTRMNNTSSGSQPGVFPNNATMEMQQQYNESMAGQTSNDVKPTLSGNPSVNSSQNAPVNARMLLPGNSQALQMPVPPRPQQLDPQQLITR MLPVCPCWDNDGMQQYPNAGIQKYPQMFEGVLNQGAGTPFSAGQSALRFGPKEELFESEKLGGSELNQGKSDMTIENNLVSLDPQQLRLHQRLPQHMMRP NFPQTGWNNLSQDTKKEEQQHPKRKPAQSPRLSAGTLAQSPLSSRSGEYSGNSAGPHMGGVAAVTSLGSQKDKSAVTSLPAIAGTASAKRRSNSVPKNSA MSGVASPASVGNISGSLNANSPTVGTQSMADHAILDRFAKIEIVASRHQLSRKRNKLDDYPRKQNTYNPQNIAVCLSNAANYEDFKDEIKERQLSKSLVG GNINVLKIRVMNFMQGERVLQGNVVTYVPKARARMIMMEKSNDGTVAMHYGDLEDGDVLSAEEYLPTLPNTHFADLLAQQFCTLVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72390			unknown protein		Lus10013169 [exp]	0	1
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	3.3	0.9120
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	3.9	0.8654
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	4.5	0.8734
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	4.5	0.8554
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	4.7	0.8734
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	5.3	0.9062
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	5.5	0.8825
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	5.7	0.8980
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036138 [exp]	6.0	0.8737
AT3G17900			unknown protein		Lus10036712 [exp]	6.0	0.8732

Compare expression of checked genes

Lus10013169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.