Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14130 495 / 7e-177 Aldolase-type TIM barrel family protein (.1) AT3G14150 483 / 3e-172 Aldolase-type TIM barrel family protein (.1.2) AT4G18360 429 / 1e-150 Aldolase-type TIM barrel family protein (.1.2) AT3G14420 428 / 2e-150 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 422 / 6e-148 Aldolase-type TIM barrel family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008133 [exp] 679 / 0 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10038507 [exp] 426 / 2e-149 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 416 / 2e-145 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10005590 [exp] 415 / 7e-145 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013725 [exp] 413 / 3e-144 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10038144 [exp] 287 / 7e-96 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10042495 [exp] 283 / 3e-94 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013173 [exp] 259 / 1e-86 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10013174 [exp] 201 / 3e-64 AT3G14150 142 / 3e-42 Aldolase-type TIM barrel family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G069600 [exp] 530 / 0 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 524 / 0 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 509 / 0 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.001G394400 [exp] 421 / 3e-147 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.004G065200 [exp] 417 / 8e-146 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 415 / 3e-145 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10013171 pacid=23164167 polypeptide=Lus10013171 locus=Lus10013171.g ID=Lus10013171.BGIv1.0 annot-version=v1.0 ATGGCAGGCGAACCGGTCAATGTGACCGAGTTCGAAGCGCTGGCGAAACGAGCCCTTCCGAAAATGTACTTCGACTTCTATGCTGGGGGAGCTGAGGATG AATCTACACTCAAAGAAAACGAGGAAGCGTATCGAAGAATCACGATTCGTCCAAGAGTTTTAGTAGATGTGAGCAGGATAGATACAAGTACTACCATATT GGGTTATCCCATCTCATCTCCTATTATGGTGGCTCCAAGTGCTCTGCACAAGCTAGCAAATCCAGAAGGAGAACTTGCCACTGCTAGAGCTTCTGCTTCC TCGAAAACTATCATGATTCTGTCCTTCTCATCCAGTTACAATGTCGAGGAGGTTGCTGCTAGTTGCGAAGCAGTTCGTTTCTTCCAATTATATGTCTACA GAGGACGACATATCGCTGAGAACTTAGTGCAGCGAGCTGAACGAAGCGGATATAAGGCTATCGTGTTGACAGTAGACTGTCCGCGACTTGGTCGAAGGGA GGCAGACATTAGGAACAGGATGATTGTCCCAAAGTTGAAGAATGTCGAAGACTTTGTATCGAATGATATAGATGCTGGTGGTGGTTCAAACTTGGAAGCT TATGCAAACTCTACATTCGATCCTACACTGAATTGGAAGGATGTCGCGTGGTTGAAGTCCATCACTAACTTGCCTATCCTGCTTAAGGGAATACTCACTC ATGAAGATGCAATAAAAGCCGTGGAGGTAGGTGCTGCGGGGATCGTTGTCTCGAATCATGGCGCCCGGCAGTTGGATTACAGTCCTTCCACAATCAGTGT GGTGGAAGAGGTGGCTCGCGCGGTGAAAGGGAAGGTTCCGGTAATAGTGGACGGAGGAGTGCGGAGAGGGACTGACGTTTTCAAGGCATTGGCATTGGGT GCACAAGCAGTCCTCGTTGGAAGGCCGGTCATTTACGGGTTGGCGGCCAAGGGTGAAAAGGGGGTGAAGCAAGTGATTGGGATGCTGAAGGATGAGTTTG AGCTCACAATGGCACTTGCTGGATGTACTAGCATCAAGGATATCAGTAGAAGCCATGTAAGGACCGAGCGAGACAGACTCCTATCCCTACTCTAA
AA sequence Show only first row Show all	>Lus10013171 pacid=23164167 polypeptide=Lus10013171 locus=Lus10013171.g ID=Lus10013171.BGIv1.0 annot-version=v1.0 MAGEPVNVTEFEALAKRALPKMYFDFYAGGAEDESTLKENEEAYRRITIRPRVLVDVSRIDTSTTILGYPISSPIMVAPSALHKLANPEGELATARASAS SKTIMILSFSSSYNVEEVAASCEAVRFFQLYVYRGRHIAENLVQRAERSGYKAIVLTVDCPRLGRREADIRNRMIVPKLKNVEDFVSNDIDAGGGSNLEA YANSTFDPTLNWKDVAWLKSITNLPILLKGILTHEDAIKAVEVGAAGIVVSNHGARQLDYSPSTISVVEEVARAVKGKVPVIVDGGVRRGTDVFKALALG AQAVLVGRPVIYGLAAKGEKGVKQVIGMLKDEFELTMALAGCTSIKDISRSHVRTERDRLLSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013171 [exp]	0	1
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	3.3	0.7180
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10034774 [exp]	4.2	0.6986
AT1G63610			unknown protein		Lus10013233 [exp]	7.5	0.6956
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10007886 [exp]	13.8	0.6809
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10032612 [exp]	16.5	0.5985
AT3G25545			unknown protein		Lus10029095 [exp]	17.7	0.6673
AT2G29590			Thioesterase superfamily prote...		Lus10018205 [exp]	28.8	0.6963
AT4G31250			Leucine-rich repeat protein ki...		Lus10026988 [exp]	33.2	0.5982
AT4G18905			Transducin/WD40 repeat-like su...		Lus10015348 [exp]	36.9	0.6756
AT4G21215			unknown protein		Lus10020063 [exp]	38.7	0.6794

Compare expression of checked genes

Lus10013171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.