Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66840 44 / 6e-05 SAP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008134 [exp] 312 / 6e-107 AT5G66840 127 / 1e-32 SAP domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G069700 [exp] 58 / 1e-09 AT5G66840 207 / 2e-60 SAP domain-containing protein (.1) Potri.005G136000 [exp] 45 / 3e-05 AT5G66840 231 / 2e-70 SAP domain-containing protein (.1) Potri.004G134400 [exp] 41 / 0.0004 AT3G08505 326 / 2e-110 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0306 [flax] [poplar] HeH PF02037 [flax] [poplar] SAP SAP domain
Representative CDS sequence Show only first row Show all	>Lus10013172 pacid=23164168 polypeptide=Lus10013172 locus=Lus10013172.g ID=Lus10013172.BGIv1.0 annot-version=v1.0 ATGATTAAAGCTGGCCAGGTTGAGAAACTGAAAATAGACCAATCCAAGGCTTACCTGAGGAAGCATGGATTGCGATTGAGTGGCTGCAAAGCCATGCTCA TTCAACGCATCAAAGAGCATCAAGAGGTCTCCAGAAAGGATCCGAAGAGGAAGCACGTCGATTCTATTCACTCAACTGAACCAGCAAAGGTGGGTTCTTT GCTTGTTCAACAGCCAAGTATAGTGGTGAATCCGCAAACAACAGTAGCTCAAGGAAAACAACACGGGAAAGGAACAAATGAAGATCCAACCACAGTTGCA ACTAACATGGAAATCAGACTTCAGAAGCCTCCATATTACCCTCAACAGGATCCAATGGCGAATCGAAACTCGAATTTTTCGTTGGAGTCAAGGAAGATGA TCCTTCAAGGTGGAAGACCAAACAACCATGCACAGAAGCACGAAAGTTACTGCCGGGGAGATCAAGTTCCTTGGGAGCTACTACAACCTACGAGGTATGG TGACAATCAACAAGTGCAGAACTTCAGGAGGCAACCTTTGACTCGAATGGACAATCGTGGTCCAGCTAGGCCTCCGCCGTCACATGGACGACAGATGTGC AAATACTATGCTCAGGGAAGATGCTATTTTGGCGACGGTTGCAAGTTCTCGCACCAGCGCGATGAGGTACCTTCGTTTGGTCCGAGGAGGGAGCATCAGT ACGGCGGAAGGCTATATGAAGGACATTGCTAG
AA sequence Show only first row Show all	>Lus10013172 pacid=23164168 polypeptide=Lus10013172 locus=Lus10013172.g ID=Lus10013172.BGIv1.0 annot-version=v1.0 MIKAGQVEKLKIDQSKAYLRKHGLRLSGCKAMLIQRIKEHQEVSRKDPKRKHVDSIHSTEPAKVGSLLVQQPSIVVNPQTTVAQGKQHGKGTNEDPTTVA TNMEIRLQKPPYYPQQDPMANRNSNFSLESRKMILQGGRPNNHAQKHESYCRGDQVPWELLQPTRYGDNQQVQNFRRQPLTRMDNRGPARPPPSHGRQMC KYYAQGRCYFGDGCKFSHQRDEVPSFGPRREHQYGGRLYEGHC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013172 [exp]	0	1
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	2.4	0.7687
AT3G47570			Leucine-rich repeat protein ki...		Lus10030852 [exp]	12.2	0.7829
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	14.7	0.7009
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	17.4	0.7743
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	20.0	0.7369
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	20.5	0.7583
					Lus10034724 [exp]	26.6	0.7365
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	29.4	0.7179
AT1G17400			unknown protein		Lus10039921 [exp]	30.0	0.7486
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10042849 [exp]	32.9	0.7411

Compare expression of checked genes

Lus10013172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.