Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14130 219 / 2e-71 Aldolase-type TIM barrel family protein (.1) AT3G14150 219 / 3e-71 Aldolase-type TIM barrel family protein (.1.2) AT3G14420 202 / 4e-65 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 202 / 1e-64 Aldolase-type TIM barrel family protein (.1.2.3) AT4G18360 196 / 2e-62 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013171 [exp] 258 / 1e-86 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 253 / 2e-84 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10038507 [exp] 201 / 3e-64 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 199 / 2e-63 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10005590 [exp] 190 / 5e-60 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013725 [exp] 190 / 5e-60 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10038144 [exp] 177 / 8e-56 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10042495 [exp] 161 / 1e-49 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013724 [exp] 106 / 2e-30 AT3G14420 170 / 2e-53 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G069600 [exp] 233 / 8e-77 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 233 / 1e-76 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 231 / 3e-76 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.001G394400 [exp] 196 / 2e-62 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.004G065200 [exp] 195 / 7e-62 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 194 / 1e-61 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10013173 pacid=23164171 polypeptide=Lus10013173 locus=Lus10013173.g ID=Lus10013173.BGIv1.0 annot-version=v1.0 ATGGTTGCCTCACAGCTCAAGAATGTGGAAGATAATACTGATGTTGCCTGGTTGAAGTCCATTACTAACTTGCCAATCCTGCTTAAGGGAATACTCACTC ATGAAGATGCACTAAAATCGTTGGAAGTGGGAGCTGCAGGGATAATCGTCTCAAACCATGGAGCTCGGCAGCTGGATTACAGTCCTGCCACAATCAGTGT GGTGGAAGAGGTGGCTCGAGCGGTGAAAGGTAGGGTTCCCGTAATTGTGGATGGAGGAGTTCGAAGAGGAACAGATGTTTTCAAGGCATTGGCATTGGGT GCACAAGCAGTCCTCGTTGGAAGGCCAGTCATTTACGGGCTGGCAGCCAAGGGTGAACAAGGGGCGAGGAAAGTGATTGAGATGTTGAAGGACGAATTTG AGCTCACCATGGCACTTTCCGGGTGTACTAGTATCAAGGATATCACTAGAAGCCATGTAAGAACCGAGAGAGACAGACTCCTATCTTTGCTCTAG
AA sequence Show only first row Show all	>Lus10013173 pacid=23164171 polypeptide=Lus10013173 locus=Lus10013173.g ID=Lus10013173.BGIv1.0 annot-version=v1.0 MVASQLKNVEDNTDVAWLKSITNLPILLKGILTHEDALKSLEVGAAGIIVSNHGARQLDYSPATISVVEEVARAVKGRVPVIVDGGVRRGTDVFKALALG AQAVLVGRPVIYGLAAKGEQGARKVIEMLKDEFELTMALSGCTSIKDITRSHVRTERDRLLSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	0	1
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	1.0	0.9161
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	1.4	0.9142
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	2.0	0.8871
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	2.4	0.8779
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	3.0	0.8958
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	4.2	0.8728
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	5.0	0.8821
AT1G73350			unknown protein		Lus10026363 [exp]	6.6	0.8676
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10035033 [exp]	7.9	0.8098
AT2G23770			protein kinase family protein ...		Lus10021889 [exp]	8.0	0.8731

Compare expression of checked genes

Lus10013173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.