Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11890 411 / 2e-148 ATSEC22, SEC22 SECRETION 22, Synaptobrevin family protein (.1) AT5G52270 112 / 1e-30 SNARE-like superfamily protein (.1) AT3G54300 52 / 5e-08 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G25340 52 / 6e-08 ATVAMP712 vesicle-associated membrane protein 712 (.1) AT5G58060 50 / 2e-07 ATYKT61, ATGP1, YKT61 SNARE-like superfamily protein (.1.2) AT5G22360 49 / 7e-07 ATVAMP714 vesicle-associated membrane protein 714 (.1) AT4G32150 47 / 2e-06 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036987 [exp] 443 / 5e-161 AT1G11890 415 / 6e-150 SECRETION 22, Synaptobrevin family protein (.1) Lus10008135 [exp] 395 / 2e-141 AT1G11890 363 / 7e-129 SECRETION 22, Synaptobrevin family protein (.1) Lus10015808 [exp] 130 / 5e-36 AT5G08530 440 / 6e-153 51 kDa subunit of complex I (.1) Lus10000754 [exp] 52 / 3e-08 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10043394 [exp] 51 / 1e-07 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10034189 [exp] 51 / 1e-07 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10036297 [exp] 47 / 2e-06 AT5G58060 364 / 3e-130 SNARE-like superfamily protein (.1.2) Lus10019047 [exp] 47 / 2e-06 AT5G58060 362 / 3e-129 SNARE-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165600 [exp] 420 / 1e-151 AT1G11890 427 / 9e-155 SECRETION 22, Synaptobrevin family protein (.1) Potri.003G069900 [exp] 417 / 1e-150 AT1G11890 429 / 2e-155 SECRETION 22, Synaptobrevin family protein (.1) Potri.012G140600 [exp] 148 / 1e-44 AT5G52270 211 / 2e-69 SNARE-like superfamily protein (.1) Potri.009G018900 [exp] 57 / 6e-10 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.010G239900 [exp] 57 / 8e-10 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.001G219200 [exp] 56 / 2e-09 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1) Potri.008G019400 [exp] 56 / 3e-09 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.018G125900 [exp] 56 / 3e-09 AT4G32150 276 / 1e-94 vesicle-associated membrane protein 711 (.1) Potri.018G110700 [exp] 52 / 3e-08 AT5G58060 375 / 8e-135 SNARE-like superfamily protein (.1.2) Potri.006G256200 [exp] 52 / 4e-08 AT4G32150 352 / 5e-125 vesicle-associated membrane protein 711 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10013175 pacid=23164140 polypeptide=Lus10013175 locus=Lus10013175.g ID=Lus10013175.BGIv1.0 annot-version=v1.0 ATGGTGAAGCTGACAATGATAGCTCGTGTTACTGACGGTCTTCCACTGGCGGAAGGTCTGGATGATGGCCGTGATGTCAAAGATATTGAATTGTACAAGC AGCAAGTCAAGGCCTTGTTTAAGAATCTCGCCATTCGGCAGAACGAGCCTTCGAGGATGTCCGTCGAGACTGGCCCTTACGTCTTCAACTATATTATCGA AGGACGAGTATGCTACCTTACGATGTGTGACCGTGCATATCCTAAGAAACTCGCCTTTCAATATCTCGAAGACTTGAAAAACGAATTCGAGCGTGTCAAC GGGGCTCACATCGAGACTGCTGCCAGACCTTATGCCTTTATCAAGTTTGATACTTTTATACAGAGAACAAAGAAATTGTACCAGGACACACATACCCAAC GGAACATTTCTAAGTTGAACGATGAACTCTATGAAGTCCACCAGATTATGACCCGTAATGTGCAAGAAGTTCTGGGAGTTGGCGAAAAGCTTGACCAGGT CAGTGAGATGTCCAGTCGGTTAACATCCGAATCTCGTGCATATGCGGACAAGGCTAGAGATTTGAATCGACAGGCATTGATTCGGAAGTGGGCTCCGGTG GCCATTGTGTTCGGAGTCGTCTTCCTCCTCTTCTGGGTTAAAACGAAGATCTGGTAA
AA sequence Show only first row Show all	>Lus10013175 pacid=23164140 polypeptide=Lus10013175 locus=Lus10013175.g ID=Lus10013175.BGIv1.0 annot-version=v1.0 MVKLTMIARVTDGLPLAEGLDDGRDVKDIELYKQQVKALFKNLAIRQNEPSRMSVETGPYVFNYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVN GAHIETAARPYAFIKFDTFIQRTKKLYQDTHTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRAYADKARDLNRQALIRKWAPV AIVFGVVFLLFWVKTKIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10013175 [exp]	0	1
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10036987 [exp]	5.9	0.9104
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	10.4	0.9116
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10031953 [exp]	10.4	0.9113
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10023494 [exp]	10.6	0.9108
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	13.9	0.9207
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	18.0	0.9060
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	19.1	0.9087
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10006527 [exp]	23.9	0.9041
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10015168 [exp]	25.0	0.9076
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Lus10039466 [exp]	29.5	0.8757

Compare expression of checked genes

Lus10013175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.