Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39350 621 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 450 / 6e-148 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 422 / 6e-138 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G01580 402 / 7e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 390 / 7e-125 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 379 / 1e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 375 / 6e-121 MEF22 mitochondrial editing factor 22 (.1) AT4G21300 379 / 1e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 371 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 375 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008136 [exp] 1206 / 0 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 436 / 3e-142 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 424 / 2e-138 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 394 / 4e-127 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 387 / 2e-123 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 382 / 3e-121 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 378 / 4e-120 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025009 [exp] 375 / 4e-120 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 375 / 4e-119 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G124400 [exp] 764 / 0 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 433 / 4e-142 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 432 / 4e-141 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 404 / 5e-131 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 402 / 3e-130 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G205900 [exp] 388 / 2e-125 AT2G17210 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 382 / 7e-123 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 382 / 1e-121 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 380 / 2e-121 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 378 / 4e-121 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013176 pacid=23164156 polypeptide=Lus10013176 locus=Lus10013176.g ID=Lus10013176.BGIv1.0 annot-version=v1.0 ATGAGCAACCCAGCTCCAACTCTTGCCAAGGCCAACTCCAAGCTTGTACAAGCCGTACAGCTTCGTCTCCGCTCTTTAGCCAATGGACGGAAACTGCAGA ACACTGGTTATGGCAATGGCGCGAATGAAATCCATGAGGGGAGTGTGCTCAGGTATAATAAACTTATGAATATGCACGCAAAGAATGGTTCTTTCGACGA AGTACTCAAGGTTTTTGTTGAAATGCGCCACTCGGGAAGTTACTTGTCTGATGCATATTCTTATCCATCTGTTGTTAAGGCTTGTAGCGAGCTATCCTTA CTGCGGATTGGTAGAGTAGTTCATGGCCAGACTTTTGTTTCCTCGTTTGGGTATAATTCATTTGTTCAGAACTCTTTAATGTCTATGTATATGAGATTGG GGGAGAAGGAGGTTGCTAGGAAGGTGTTTGATGTACTGGAAGAGAAAACTACGGTTTCCTGGAACATTTTAATCAACGGGTATTTCAAGAACGGATGTCC CGGCATTGCCCTGACGATTTTCGACGAGATGATACGTTGCAAGGTTGAATTGGAAAGTGCCACTGTGGTTTCTGTATTGCCAGCTTGTGGGTGGTTGAAG GAATTGCAGACTGGGAGGAAAGTTCATATTTTGGTAAAGGAGAAGGGTTTGGACAAGAAAATAGAAGTATGTAATTCGTTGGTTGATATGTATTCGAAAT GCGGCAGTATGGAAGAGGCAAAGATGGTGTTTGATGAAATGACTGAGAGAGATGTAATAACTTGGACCTCCATGATTAATGGATATATCTTGAATGGTGA TGCTAGAGCTGCATTGTACTTTTGCACGGCAATGCAAAATGTGGAAATCATGCCGAATTTCGTGACAGTGGCTTTACTTCTTTCCGCTTGTGCAAGTTTG AAGGATTTAATGTATGGTCGTTGCATCCATGGATTGTCTATAAGACTACTTCTTGATTCAAAAGTTGAAGTAGAAACTTCACTGATTGACATGTATGCAA AATGCCACTGTCTCAAGATTAGCTTTGAAGTTTTAGGAAGAAGTGCAAGAAAACGAATCGTCCCATGTAATGCAGTACTCTCTGGGTGTGTTCATAATAA TCTCGCAGTTGAGGCGGTGCAGTTTTTCAAGAACATGTTATCAGAAGGAGTAAGACCAGATGGCTCAACATTGAACTGTCTGTTACCTGCTTACTCTGAT CTGGCTGATTTACCCCCTGCGGAAAACGTTCACTGTTTCGTAATGAGGTCAGGGTTTCTTTCTCAAGTTGAAGTTGCCACTTCTCTTATAGATATATACT CCAAGTGTGGAGTACTGGAATCAGCTCACCGGATCTTTGACGATGTGCCGAAAAAGGACATCTTTGTTTGGAGCGTGATAATAGCAGGTTACGGTACGCA TGGACATGGACAAACTGCCGTTTTGCTTTTTAGGCGAATGGTCGATTCCGGCATCGCTCCGAATGAAGTCACAGTTACTTCGGTATTGCACGCTTGTAGT CATGCTGGGTTGGTGGATGAGGGTCTCTATTTGTTCAACTTGATGAGACAAGATTTTCGGGCCGGGCCTAATGAGAATCACTACACTTGTATTGTTGATA TGCTTGGTCGTGCGGGTCGATTAGAGGAAGCCTATGATATTATTAGAACGATGCCGGGTGTACCTAGTCATGCTATTTGGGGTGCGCTACTTGGTGCTTG TGTTATTCATCAAAAGGTTGAGTTAGGGGAATTGGCAGCGGTTTCACTCTTTCAACTTGAGCCAGAGAATACTGGAAATTACATACTGTTGGGGAAACTT TATGCTGCAGCTGGCCGGTGGGAAGATGCAGAAATGTTAAGAGAGTTGATGAATGATACGGGATTGAGAAAAGAATCTGCTTATAGTCTTATTGGCATCT AA
AA sequence Show only first row Show all	>Lus10013176 pacid=23164156 polypeptide=Lus10013176 locus=Lus10013176.g ID=Lus10013176.BGIv1.0 annot-version=v1.0 MSNPAPTLAKANSKLVQAVQLRLRSLANGRKLQNTGYGNGANEIHEGSVLRYNKLMNMHAKNGSFDEVLKVFVEMRHSGSYLSDAYSYPSVVKACSELSL LRIGRVVHGQTFVSSFGYNSFVQNSLMSMYMRLGEKEVARKVFDVLEEKTTVSWNILINGYFKNGCPGIALTIFDEMIRCKVELESATVVSVLPACGWLK ELQTGRKVHILVKEKGLDKKIEVCNSLVDMYSKCGSMEEAKMVFDEMTERDVITWTSMINGYILNGDARAALYFCTAMQNVEIMPNFVTVALLLSACASL KDLMYGRCIHGLSIRLLLDSKVEVETSLIDMYAKCHCLKISFEVLGRSARKRIVPCNAVLSGCVHNNLAVEAVQFFKNMLSEGVRPDGSTLNCLLPAYSD LADLPPAENVHCFVMRSGFLSQVEVATSLIDIYSKCGVLESAHRIFDDVPKKDIFVWSVIIAGYGTHGHGQTAVLLFRRMVDSGIAPNEVTVTSVLHACS HAGLVDEGLYLFNLMRQDFRAGPNENHYTCIVDMLGRAGRLEEAYDIIRTMPGVPSHAIWGALLGACVIHQKVELGELAAVSLFQLEPENTGNYILLGKL YAAAGRWEDAEMLRELMNDTGLRKESAYSLIGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10013176 [exp]	0	1
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	1.7	0.8829
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	3.0	0.8581
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	5.1	0.8655
AT3G50430			unknown protein		Lus10022468 [exp]	11.2	0.8403
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	13.6	0.8554
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	16.4	0.8452
AT2G46200			unknown protein		Lus10000549 [exp]	17.5	0.8446
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	20.5	0.8349
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	24.0	0.8327
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	25.5	0.8229

Compare expression of checked genes

Lus10013176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.