Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14170 452 / 3e-155 Plant protein of unknown function (DUF936) (.1) AT1G08760 173 / 2e-46 Plant protein of unknown function (DUF936) (.1) AT4G13370 154 / 5e-40 Plant protein of unknown function (DUF936) (.1) AT1G23790 142 / 1e-36 Plant protein of unknown function (DUF936) (.1) AT1G70340 134 / 5e-34 Plant protein of unknown function (DUF936) (.1) AT3G19610 128 / 3e-31 Plant protein of unknown function (DUF936) (.1) AT2G31920 102 / 7e-23 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008138 [exp] 747 / 0 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10008137 [exp] 179 / 2e-54 AT3G14170 84 / 2e-20 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 172 / 1e-45 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 169 / 8e-45 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10043255 [exp] 159 / 9e-42 AT4G13370 652 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10019398 [exp] 155 / 3e-40 AT4G13370 646 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 142 / 8e-39 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 142 / 2e-36 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10002129 [exp] 141 / 2e-35 AT3G19610 260 / 9e-77 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G070200 [exp] 633 / 0 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 172 / 3e-46 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 166 / 5e-44 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 158 / 2e-41 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 148 / 2e-38 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 142 / 3e-36 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 139 / 5e-35 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10013177 pacid=23164157 polypeptide=Lus10013177 locus=Lus10013177.g ID=Lus10013177.BGIv1.0 annot-version=v1.0 ATGGCATCTCTGATACCAGGAGTGCTGATAAAGCTTCTCCAGAGCATAACCTCAAACGTCAAAGTTCGAGGCGAGTATAGGTCCGTGCTGCTACAAGTTA TCAGCATCGTACCTGCATTGAGTGGCTCGGAGTTGTGGCCGAACCATGGATTCTTCATTAAAGTGTCAGACTCCTCTCATTCAACATATGCATCCCTTTC GAAGGAAGATAATGAGCTGATCTTGAATAACAAGTTACAACTCGGGCAGTTCTTCTATGTTGATAAAGCAGAAGCAGGCACTCCGGTTCCAATCCTGGTT GGTGTTAGACCGCTCCCTGGAAGGAATCCTTTTGTCGGAAACCCCAAAGATTTGATGCAGATGCTTGTTCCGTCCATGGACTCTGTACCTGTCGAGAATG ATGCAGGATTACTTGTTCAGAAATCAAAGAGAGGGGAAAGCACAAGACATAGCATTATCATCAAAGAAGAGAAAGCTGTTGTTGCTTCCAGGTATATGCA GGGTGTTTCGGTAATGAACCCTAAATCTGGTGGTGCCGATTCCAACGGATGTGGGAAGAGCATTGAGAGTGAAAATGGTTTTAAGAAAGTCGGAACAGCA AAAGGCAAGCACCAAGAAAATAAAGGTCAGGCAAGGCCAGCCACTCCATCCTGGAATCGACCGGAAACATTGCCATCAACTCCTGAGGTTCCAGTATCTT CAGATGGCAAATCTGCAAGAGGTGCATCCAATAAGCAGCAACCTAAGAGCTCGAGCTCGAGTTCGACTTCAAGTAACAAACATGAGAATGTGTTATCTGA TGCTGTATCTTGGGCCTCTCTACCAACTAACTTGTTGAAGCCTGGAAAAGTAATGCTGAGGAGGAAATATTTAGCTTCTATGGTGGCCACAGAAGCACAG AAGGAGGCATCAAATGCATCCAATCTCGTCAAGTGCCTCAATATGTTTGCAGACCTGTGCTCAACTGCTTCACCAGAGAGCCCACATCTTTCCATCCCAA AGTTCTTCACACTTCAACAGTGCATTGACCAGCCAAATGTATCAACTCCGCTGAAGGACAAATCATCTCAGTTGAGCATGCCATTCCCTGCTTCTGAAAC AGGAAAAGCTAGCAAAAGACTGGGTCCAGTTCATGCCAAAACAATGGGGAAATCATTAAAGACTGCAATCAGGGAATTCGGTGCAGCTGAAAAGATTGAA TGGGCCAAAGTAGATGCTGCAGAGGATTTTAACGAACTAAGAGAAGGCCTTATACATGAAACAAGAACTTGGTTTCTGAGATTCATGGATGGAGCATTGG ACTCGGGATTCCGGGTTCCGATCCAAGAAAGGAAAGGGAAAGGTAGCGGAAGAGGAAGATTAATGGAAGCTGAGAACAACCAGATTGCTGTCACTTTATC ACAACTCAAGCATGCAAATGACTGGTTAGACAAACTAAGAAACAGCCAGAATGATGAAACCAATGCTCCGCCCATTGTGGATATTGTTGACTGTTTGAAG AAAAAGGTATATGCTTGCCTGCTTGCTCATGTAGATTCTGCTGCATCGGCCTTGGAGAACCAAGCAGATCGATGCTGA
AA sequence Show only first row Show all	>Lus10013177 pacid=23164157 polypeptide=Lus10013177 locus=Lus10013177.g ID=Lus10013177.BGIv1.0 annot-version=v1.0 MASLIPGVLIKLLQSITSNVKVRGEYRSVLLQVISIVPALSGSELWPNHGFFIKVSDSSHSTYASLSKEDNELILNNKLQLGQFFYVDKAEAGTPVPILV GVRPLPGRNPFVGNPKDLMQMLVPSMDSVPVENDAGLLVQKSKRGESTRHSIIIKEEKAVVASRYMQGVSVMNPKSGGADSNGCGKSIESENGFKKVGTA KGKHQENKGQARPATPSWNRPETLPSTPEVPVSSDGKSARGASNKQQPKSSSSSSTSSNKHENVLSDAVSWASLPTNLLKPGKVMLRRKYLASMVATEAQ KEASNASNLVKCLNMFADLCSTASPESPHLSIPKFFTLQQCIDQPNVSTPLKDKSSQLSMPFPASETGKASKRLGPVHAKTMGKSLKTAIREFGAAEKIE WAKVDAAEDFNELREGLIHETRTWFLRFMDGALDSGFRVPIQERKGKGSGRGRLMEAENNQIAVTLSQLKHANDWLDKLRNSQNDETNAPPIVDIVDCLK KKVYACLLAHVDSAASALENQADRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	0	1
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	2.8	0.9679
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	2.8	0.9712
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	3.2	0.9533
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	4.5	0.9601
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	4.6	0.9408
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	4.9	0.9572
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	4.9	0.9591
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	6.1	0.9284
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	6.7	0.9593
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	8.5	0.9613

Compare expression of checked genes

Lus10013177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.