Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14180 181 / 1e-52 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT1G54060 119 / 7e-30 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G58630 114 / 2e-28 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 100 / 3e-24 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 96 / 2e-22 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G54390 86 / 1e-18 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 85 / 1e-17 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G24860 83 / 2e-17 Trihelix Homeodomain-like superfamily protein (.1) AT3G24490 77 / 2e-15 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT2G44730 69 / 1e-12 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008141 [exp] 484 / 6e-171 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10029889 [exp] 159 / 4e-45 AT3G14180 147 / 1e-40 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 151 / 6e-40 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007273 [exp] 129 / 6e-34 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 123 / 2e-32 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 122 / 1e-31 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 114 / 4e-30 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10024143 [exp] 90 / 2e-19 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1) Lus10028984 [exp] 75 / 4e-16 AT3G14180 86 / 7e-21 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G026000 [exp] 218 / 3e-67 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.T126206 [exp] 151 / 9e-42 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 147 / 2e-40 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 124 / 9e-33 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G113600 [exp] 120 / 5e-31 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 117 / 4e-30 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.001G179800 [exp] 89 / 2e-19 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G195300 [exp] 87 / 1e-18 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 86 / 2e-18 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.010G186200 [exp] 78 / 3e-16 AT5G05550 149 / 3e-44 sequence-specific DNA binding transcription factors (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013179 pacid=23164198 polypeptide=Lus10013179 locus=Lus10013179.g ID=Lus10013179.BGIv1.0 annot-version=v1.0 ATGGACGACGACGCCGGCGACGACGAGATCCAGTCCCCCCGCTCCCCCTCGCCCTACAACGGAAGAATCTCCGTCCCCCCCCACAACGGAGACCTCCCGC CCACAGTCGCAGCCGCAGCTCCTCCTGTTTCCCCGCCGCAACGCGAGCCCAGCCCCTCCGCCGCCTACCACGTCCTTGCCCTAGCCGCCGTCCCCAAGAC GGCGAACAACGGCAGAGAGGATTGCTGGAGCGAGGCAGCTACGGCGGTGCTGATCGACGCCTGGGCGGAGCGGTACGTCGAGCTGAGCAGAGGGATTCTG AAGCAGCACCACTGGAAAGAAGTCGCTGATGTCGTCAGCAGCCGCGAAGACTACATCAAGCCCCCCAAGACCGACATCCAGTGTAAGAACCGGATCGATA CGGTGAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCGACGCCGGCGGTGGCCCTAGTTTGTGGCCGTTCTACCATCGGATTGAGCAGCTGATTGGCCT GAACCCTACCCCGACGGCGACGAAACCGTCGAGGAAGCCTGCAACCAAGACTCCTGTATCCGGATCTGCCAGAGTTCCCACCGGAATCCCTGTCGGTAAG CGGAGCAGTTCTCAGAGGCGGCAGCAACCGTATCAGTTCGGAAATCTGCAGAGTAATCGGATGAACAACGGAAGGCAGAAGGTCAGGAAAAGAGGCGCGG CGGCGATGTTGATGGATTCATCATCGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAACGGTGTCGTTTCGCAATTA CGATTATAGTTTTCCGGCGGCGAGTAAGAAGAGGAAGATGGAGCAGAATGGAGAAGTGAAAAAGGAGGAAGGAGGAGGAGGATGGGGGGATTCGATTCGG ATGCTGACGGTGTCAATAGTGAAGCTAGGGGAAGCTTACGAGCAGACGGAGAAGAAGAAGCTGGAGCAGGTGGTGGAGATGGAGAAGACGAGGATGAAGT TTATGCAGGAGCTGGAGTTACAGAGGATGCAGTTCTTCATGAAGACCCAGATGGAGATTTCCCAGATCAAGAGCAGAAGAATAAGAAGGCAATCTCCATC ACCACCAGCAGCTGCTGCTGGTGGTGGTGGAATTGGGATCGTTGCGGCAGCAGCCATCGCCGCCGCTTCTTCCAATCATGGTGATAGTGATGATGAACTG AAGGAGGAGTTGAGTGAGTGA
AA sequence Show only first row Show all	>Lus10013179 pacid=23164198 polypeptide=Lus10013179 locus=Lus10013179.g ID=Lus10013179.BGIv1.0 annot-version=v1.0 MDDDAGDDEIQSPRSPSPYNGRISVPPHNGDLPPTVAAAAPPVSPPQREPSPSAAYHVLALAAVPKTANNGREDCWSEAATAVLIDAWAERYVELSRGIL KQHHWKEVADVVSSREDYIKPPKTDIQCKNRIDTVKKKYKSEKAKIDAGGGPSLWPFYHRIEQLIGLNPTPTATKPSRKPATKTPVSGSARVPTGIPVGK RSSSQRRQQPYQFGNLQSNRMNNGRQKVRKRGAAAMLMDSSSEEEEEEEEEEEEEEEEEETVSFRNYDYSFPAASKKRKMEQNGEVKKEEGGGGWGDSIR MLTVSIVKLGEAYEQTEKKKLEQVVEMEKTRMKFMQELELQRMQFFMKTQMEISQIKSRRIRRQSPSPPAAAAGGGGIGIVAAAAIAAASSNHGDSDDEL KEELSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10013179 [exp]	0	1
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10008141 [exp]	1.0	0.8621
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	1.7	0.8324
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	2.0	0.8497
AT3G58110			unknown protein		Lus10002186 [exp]	3.2	0.7942
AT3G49601			unknown protein		Lus10008501 [exp]	5.9	0.7629
AT1G27435			unknown protein		Lus10041533 [exp]	6.0	0.7839
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	6.0	0.8038
					Lus10006375 [exp]	7.1	0.7547
AT5G20130			unknown protein		Lus10037880 [exp]	8.8	0.7461
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002252 [exp]	11.2	0.7436

Compare expression of checked genes

Lus10013179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.