Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72430 107 / 8e-31 SAUR-like auxin-responsive protein family (.1) AT1G17345 105 / 5e-30 SAUR-like auxin-responsive protein family (.1) AT5G20820 81 / 2e-20 SAUR-like auxin-responsive protein family (.1) AT3G12955 54 / 7e-10 SAUR-like auxin-responsive protein family (.1) AT4G34760 46 / 3e-07 SAUR-like auxin-responsive protein family (.1) AT3G43120 44 / 4e-06 SAUR-like auxin-responsive protein family (.1) AT2G21220 42 / 7e-06 SAUR-like auxin-responsive protein family (.1) AT5G20810 42 / 1e-05 SAUR-like auxin-responsive protein family (.1.2) AT5G50760 42 / 4e-05 SAUR-like auxin-responsive protein family (.1) AT1G16510 41 / 4e-05 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037443 [exp] 215 / 3e-73 AT1G72430 114 / 1e-33 SAUR-like auxin-responsive protein family (.1) Lus10031790 [exp] 58 / 3e-11 AT3G12955 98 / 8e-27 SAUR-like auxin-responsive protein family (.1) Lus10012189 [exp] 44 / 4e-06 AT4G34760 169 / 3e-56 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 44 / 6e-06 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10007553 [exp] 43 / 6e-06 AT4G34760 168 / 9e-56 SAUR-like auxin-responsive protein family (.1) Lus10033161 [exp] 42 / 3e-05 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1) Lus10024326 [exp] 41 / 3e-05 AT1G75580 166 / 2e-54 SAUR-like auxin-responsive protein family (.1) Lus10012432 [exp] 41 / 4e-05 AT1G75580 164 / 9e-54 SAUR-like auxin-responsive protein family (.1) Lus10034511 [exp] 39 / 0.0003 AT1G75580 161 / 9e-53 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071000 [exp] 114 / 2e-33 AT1G72430 126 / 9e-39 SAUR-like auxin-responsive protein family (.1) Potri.006G137000 [exp] 100 / 6e-28 AT5G20820 135 / 3e-42 SAUR-like auxin-responsive protein family (.1) Potri.001G164300 [exp] 93 / 4e-25 AT1G72430 108 / 2e-31 SAUR-like auxin-responsive protein family (.1) Potri.011G143400 [exp] 57 / 2e-11 AT3G12955 91 / 2e-24 SAUR-like auxin-responsive protein family (.1) Potri.001G458000 [exp] 56 / 1e-10 AT3G12955 86 / 3e-22 SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 46 / 2e-07 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1) Potri.009G126000 [exp] 45 / 6e-07 AT4G34760 179 / 4e-60 SAUR-like auxin-responsive protein family (.1) Potri.002G024300 [exp] 43 / 5e-06 AT1G75580 170 / 2e-56 SAUR-like auxin-responsive protein family (.1) Potri.005G237200 [exp] 42 / 8e-06 AT1G75580 164 / 5e-54 SAUR-like auxin-responsive protein family (.1) Potri.006G211000 [exp] 42 / 1e-05 AT2G36210 130 / 3e-40 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10013181 pacid=23164195 polypeptide=Lus10013181 locus=Lus10013181.g ID=Lus10013181.BGIv1.0 annot-version=v1.0 ATGGCCAAGGTCGGAAAGCTCACCAAGCTCAAATCCGCAATCAAGAGGTGGCCCTCTTTCACCACCTCCAAGCAACACCATTCATCCTCCTCCTCCTCCT CCATGGAACGCCGCCACCAGGAAGAAGACTCCGATGATCATCAGAGTCATCATGATCTCCACCAGGTGTATGTCGGGAAGTCGCGGCGGCGGTACCTGCT GACGTCGGAGGTGATGTGCCATCCCCTGTTTCAGGAACTGATGCAGAGGTCAGGCGGGTTCGATGCAGACGGCAACGTTGTTGTCGGGAGCGAGGTCGTT CTGTTCGAGCATTTGCTTTGGATGATTAACCAGAATTGCGGCGGCGGGGGAGAGACGGCGGTTTCCGGGCCGATGGAGGATTTGGTCGGTTTCTATTGCT GCTGA
AA sequence Show only first row Show all	>Lus10013181 pacid=23164195 polypeptide=Lus10013181 locus=Lus10013181.g ID=Lus10013181.BGIv1.0 annot-version=v1.0 MAKVGKLTKLKSAIKRWPSFTTSKQHHSSSSSSSMERRHQEEDSDDHQSHHDLHQVYVGKSRRRYLLTSEVMCHPLFQELMQRSGGFDADGNVVVGSEVV LFEHLLWMINQNCGGGGETAVSGPMEDLVGFYCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72430			SAUR-like auxin-responsive pro...		Lus10013181 [exp]	0	1
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	8.5	0.8550
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	8.8	0.8646
AT1G49230			RING/U-box superfamily protein...		Lus10033515 [exp]	12.0	0.7828
AT1G20950			Phosphofructokinase family pro...		Lus10016047 [exp]	17.1	0.8401
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	18.7	0.8441
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023662 [exp]	18.9	0.8532
AT3G58730			vacuolar ATP synthase subunit ...		Lus10038979 [exp]	19.3	0.8250
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	27.7	0.8349
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	31.4	0.8465
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	32.1	0.8380

Compare expression of checked genes

Lus10013181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.