Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72440 925 / 0 SWA2, EDA25 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037444 [exp] 1532 / 0 AT1G72440 1012 / 0.0 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G164100 [exp] 1081 / 0 AT1G72440 972 / 0.0 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03914 [flax] [poplar] CBF CBF/Mak21 family
Representative CDS sequence Show only first row Show all	>Lus10013182 pacid=23164183 polypeptide=Lus10013182 locus=Lus10013182.g ID=Lus10013182.BGIv1.0 annot-version=v1.0 ATGGCGACAAAGAAGCAGAAGAAGTCCTCCGCAGCCGACGGCAAGAGCAAGCAGACGGGCGGCGACATCGACCGACTGAAATCAGAGGTCGCCTCTTTCG CTTCTACGCTAGGCCTATCTTCTACAGCTCCATCTTCCTTCTCTGGCTTCAACGATGCCGATTTCCGGAAAACCGGCCGTCTCAAGCCAATTCAGAAACC GAAACCCCAATCCGATACCAAAACCAAGCCTCCTCAGAAGCAGGAGAAGAAACCCAGAAACGAGAAATCAAATACCAAACTGGAGATCAAGCCGAAGCCA AAGCCTCCAGTTTTGACGCTGGATGATGAGGATGCTAACCCAGCCAGGGCGAGAGCGGCTTACAAGTACAAGGACCTCCCCAAGCTGCCGCTGATGAAGG CAAATGCGACTGGCGTGTGGCACGTGGATGCGGAGGAATTGGAGGTGAAAGTGTTGGGGGAGGCTCACAAGAAGCTGGATGTTAAGATGAGAGTGGAGGA GTGGAAGCAGTTTGTGGAGAAGAAGAGGGAGTTGGCTGAGAGGTTGATGTGGCAGTATGTGCAAGATTATGAGCAGGGTAGAGGACAGAGTGGAGACATT AAGATGCTTGTTACTACTCAGAGGTCTGGTACTGCTGCTGATAAGGTGTCAGCATTCGCGGTTCTTATCGGGGATAATCCTATGGCTAATCTGCGATCAG TGGATGCTCTTCTTGGAATGGTGGCATCAAAGGTTGGAAAGCGCCATGCATTGTCAGGATTTGAAGCATTGAGAGAGCTATTTGTTGAAAGTTTGTTGCC TGATCGGAAGCTTAAGACCCTCCTTCAGAGGCCTCTAAATAATCTCCCTGAGACAAAAGATGGTTACTCTCTTCTACTATTTTGGTATTGGGAGGATTGC CTAAAACAGAGGTATCAACGTTTTGTGTCGGCACTTGAGGAAGCATCCAAAGACATGCTACCCATATTGAAAGATAAGGCGTTGAAGAGCATGTATTTGC TGTTGAAGAGCAAATCAGAGCAGGAGCGCAGGTTACTCTCTTCACTAGTTAACAAACTTGGCGATCCGCAAAGTAAGGGTGCATCAAATGCTGAGTATTA CTTGTCAAACCTGTTGTCTGATCATCCCAGTATGAAGGCTGTAGTCATTGATGAAGTTGACACCTTTCTATTTCGGCCTCACTTGGGCATGCGAGCCAAA TACTACGCCATTAACTTTTTGAGCCAAGTTCGACTGAGCAATAGAGATGATGGACCTAAGGTGGCAAAACGATTGATAGATGTGTACTTTGCATTATTCA AGGTGCTAATTACCGAGGCAGGTGGTCAGAAATCTAACAAAGATGCCAAATCTGAAGATAAATGTACTCCTGGTGCTTCTAAGGATGAAAAAGCCAAAAC TTCAGAAGAATCTCATATTGAGATGGATTCACGAATTCTGTCAACTCTTTTAACAGGAGTAAATAGGGCATTTCCTTATGTTTCAAGTACTGAGGCTGAC GACATCATTCAGGGTCAAACACCAATGCTCTTCCAATTGGTCCACTCCAATAACTTTAATGTAGGAGTTCAAGCCTTGATGCTCCTCGATAAAATCTCGT CCAAGAATCAGATCGTGGAAATGTTCATTGGACTTATCCTCAGAACCATGAAAAATGACGTGAACCTGAAGCGTGTTGCTGCCTTCGCAAAGCGCCTATT GCAAGTTGCTATGCAGCAGCCGCCTCAATATGCTTGTGGATCTCTGTTTCTGCTTTCTGAAGTGCTGAAAGCAAGGCCCCCTCTATGGAATATGGTGCTT CAGAGTGAAGCTTTGGATGACGAAGATGAACATTTTGAGGATGTTCTGGAAGAGACCATAACCAAGGAAGATCATGGTGATATTTCAACAGATGAACGTA ATGAGAATGGTGACCCTGAATCTGACTCTTCTGATGATGAAGAAGTCAATGCTGCCGCATCGAGTTCCGAGGATGATGATTCAGATGACGACGAGCAACT GATAAGAGAAGATCACTCAGACGAGGAGACATTTAAACCGAAACCTAGTGACGAGAAAGCTGAAGCATGTTCTGCAAAATCTTCCCTGCCTGGGGGATAC GATCCTCGTCATAGGGAACCATCTTACTGCAATGCAGACCGTGCTAGCTGGTGGGAGCTGAGAGTGCTTGCATCACATGCACACCCTTCAGTTGCTACCA TGGCTGGGACTCTTCTCTCTGGAGCAAATATAGTTTACAATGGAAACCCACTAAACGACCTGTCGTTGAATGCTTTCCTGGACAAGTTCATGGAGAAGAA AGCCAAGCAGAAGGAATGGCACGGCGGCTCTCAAATTGAACCCGCAAAGAAGCTCGACATGGAAAACAACCTGATCGGACCCGAGATTGTATCTTTGGCC GAGGACGACGTGGCTCCCGAAGATGTCGTGTTCCACAAGTTCTACACGAACAAAATGAACAGCACGAATTCGAAGAAGCAAAAGAAGAAGAAGAAGAAGA AGACTGCCGACGAAGAGGATGCAGAAGAGCTCTTTGATGCAGGTGACGGTGGCGCCAATGATGATGTGGCAGGAGTCGACGAGAGCGATAACGAAGAGAT CGACAACTTGCTGGATGCGACATTAGAAGAAGACCATGACGGCGAGTACAACTACGATGACCTGGACCGGATCGCTGACGAGGATGAGGATGAGCTCCTG GCGGATGTGAGTGACACTGAAACTGGAGCATTTTCAGATATTGGCGATGATGAGAGTGATATAGAGGTAGGAGATGTGGACGATGGCAATGATGATGATG AAGTGGCGGTTATGGATACGAAGAAAAGGAAGCGTCTGAAGAAGATTGCCGGCGGTAAGGGAGCATCTCCATTTGCGAGTTTTGAGGAGTACGAGCATTT GATGGAAGAAGGGGAAGGAGAAGGAGAGGAGGATGATCCTAGTCCGAAGAAGGACAAGAAGAAGAAGCCGAAATCACGAAAGAAGAAGCAGAAGACGAAG AAGTCATCGTCCGACTAA
AA sequence Show only first row Show all	>Lus10013182 pacid=23164183 polypeptide=Lus10013182 locus=Lus10013182.g ID=Lus10013182.BGIv1.0 annot-version=v1.0 MATKKQKKSSAADGKSKQTGGDIDRLKSEVASFASTLGLSSTAPSSFSGFNDADFRKTGRLKPIQKPKPQSDTKTKPPQKQEKKPRNEKSNTKLEIKPKP KPPVLTLDDEDANPARARAAYKYKDLPKLPLMKANATGVWHVDAEELEVKVLGEAHKKLDVKMRVEEWKQFVEKKRELAERLMWQYVQDYEQGRGQSGDI KMLVTTQRSGTAADKVSAFAVLIGDNPMANLRSVDALLGMVASKVGKRHALSGFEALRELFVESLLPDRKLKTLLQRPLNNLPETKDGYSLLLFWYWEDC LKQRYQRFVSALEEASKDMLPILKDKALKSMYLLLKSKSEQERRLLSSLVNKLGDPQSKGASNAEYYLSNLLSDHPSMKAVVIDEVDTFLFRPHLGMRAK YYAINFLSQVRLSNRDDGPKVAKRLIDVYFALFKVLITEAGGQKSNKDAKSEDKCTPGASKDEKAKTSEESHIEMDSRILSTLLTGVNRAFPYVSSTEAD DIIQGQTPMLFQLVHSNNFNVGVQALMLLDKISSKNQIVEMFIGLILRTMKNDVNLKRVAAFAKRLLQVAMQQPPQYACGSLFLLSEVLKARPPLWNMVL QSEALDDEDEHFEDVLEETITKEDHGDISTDERNENGDPESDSSDDEEVNAAASSSEDDDSDDDEQLIREDHSDEETFKPKPSDEKAEACSAKSSLPGGY DPRHREPSYCNADRASWWELRVLASHAHPSVATMAGTLLSGANIVYNGNPLNDLSLNAFLDKFMEKKAKQKEWHGGSQIEPAKKLDMENNLIGPEIVSLA EDDVAPEDVVFHKFYTNKMNSTNSKKQKKKKKKKTADEEDAEELFDAGDGGANDDVAGVDESDNEEIDNLLDATLEEDHDGEYNYDDLDRIADEDEDELL ADVSDTETGAFSDIGDDESDIEVGDVDDGNDDDEVAVMDTKKRKRLKKIAGGKGASPFASFEEYEHLMEEGEGEGEEDDPSPKKDKKKKPKSRKKKQKTK KSSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	0	1
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	1.0	0.9607
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	2.8	0.9553
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	3.5	0.9399
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	4.5	0.9186
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	4.6	0.9435
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	4.9	0.9256
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10002990 [exp]	6.3	0.9300
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	6.6	0.9169
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	8.7	0.8983
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	8.8	0.9155

Compare expression of checked genes

Lus10013182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.