Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04770 394 / 4e-139 RPSAB 40s ribosomal protein SA B (.1.2) AT1G72370 391 / 9e-138 AP40, RPSAA, RP40, P40 40s ribosomal protein SA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037445 [exp] 520 / 0 AT3G04770 413 / 9e-147 40s ribosomal protein SA B (.1.2) Lus10040626 [exp] 415 / 3e-147 AT3G04770 421 / 5e-150 40s ribosomal protein SA B (.1.2) Lus10018284 [exp] 414 / 7e-147 AT3G04770 424 / 3e-151 40s ribosomal protein SA B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071200 [exp] 422 / 1e-149 AT1G72370 384 / 1e-134 40s ribosomal protein SA (.1.2) Potri.001G164000 [exp] 419 / 1e-148 AT1G72370 386 / 9e-136 40s ribosomal protein SA (.1.2) Potri.015G112900 [exp] 416 / 2e-147 AT3G04770 399 / 6e-141 40s ribosomal protein SA B (.1.2) Potri.012G117600 [exp] 404 / 2e-142 AT3G04770 393 / 1e-138 40s ribosomal protein SA B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [flax] [poplar] SIS PF00318 [flax] [poplar] Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence Show only first row Show all	>Lus10013183 pacid=23164182 polypeptide=Lus10013183 locus=Lus10013183.g ID=Lus10013183.BGIv1.0 annot-version=v1.0 ATGGCGACCGATGCTGCTCCTCCTCGTGCCCTCTCCGCCAGGGAGCTGGACATCCAGATGATGTTGGCTGCTGAGGTTCACCTCGGCACCAAGAACTGTG ATTTCCAGATGGAGAGATACGTCTTCAAGCGCCGCAATGATGGAATCTACATCATTAACCTTGGGAAGACATGGGAAAAGCTCCAGATGGCTGCTCGGGT TATTGTAGGCATTGAGAACCCTCAGGACATCATTGTCCAATCTGCTAGGCCTTATGGTCAGAGAGCTGTGCTCAAGTTTGCTCAGTACACTGGTGCCCAC GCCATTGCTGGCAGGCATACTCCTGGTACCTTCACTAACCAGATGCAGACCTCATTCAGTGAGCCCCGTCTCTTGATCCTTACTGACCCAAGGACTGATC ATCAGCCAATTAAGGAAGGTGCTCTCGGAAACATTCCAACCATCGCCTTCTGCGACACTGACTCTCCCATGCGATACGTGGATATTGGTATCCCTGCCAA CAACAAGGGGAAGAACAGTATCGGGTGCCTCTTCTGGCTTCTGGCACGTATGGTTTTGCAGATGCGTGGAACTATTCCCCAAGGACACAAGTGGGATATC ATGGTGGACTTGTTCTTCTTCAGAGAGCCTGAAGAACAAAAGCAAGACCAAGATGAGGAACCCGACTATGCTCTTGCTGCTCCTGAATTCTATGGTATGG CTGCTGGTGGTGACTGGAACACTCCAGCTGCTGATGCCCAGTGGACTGCTGATGCTGTACAAGCCCCCATTTCTGGTGTTCCGGCAGCTTACATTGCTGA GCCGACCGCTGCACCAATTGCTGGCAATTGGGAGCCTGCACCGGTTCCTTCCCCAGCTTTTGCTCCTCCGGCATCTGCAGCTTCAGGATGGGATGAAGTA TGA
AA sequence Show only first row Show all	>Lus10013183 pacid=23164182 polypeptide=Lus10013183 locus=Lus10013183.g ID=Lus10013183.BGIv1.0 annot-version=v1.0 MATDAAPPRALSARELDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAH AIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKNSIGCLFWLLARMVLQMRGTIPQGHKWDI MVDLFFFREPEEQKQDQDEEPDYALAAPEFYGMAAGGDWNTPAADAQWTADAVQAPISGVPAAYIAEPTAAPIAGNWEPAPVPSPAFAPPASAASGWDEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	0	1
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	2.4	0.9780
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	2.8	0.9725
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	2.8	0.9762
AT5G02870			Ribosomal protein L4/L1 family...		Lus10014430 [exp]	3.0	0.9720
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	3.5	0.9757
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10031021 [exp]	4.5	0.9738
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10006565 [exp]	4.9	0.9619
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	5.5	0.9668
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	5.5	0.9733
AT2G03640			Nuclear transport factor 2 (NT...		Lus10036918 [exp]	5.6	0.9552

Compare expression of checked genes

Lus10013183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.