Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14205 914 / 0 Phosphoinositide phosphatase family protein (.1) AT3G43220 840 / 0 Phosphoinositide phosphatase family protein (.1.2) AT5G20840 828 / 0 Phosphoinositide phosphatase family protein (.1) AT1G22620 684 / 0 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT1G17340 651 / 0 Phosphoinositide phosphatase family protein (.1) AT3G51460 178 / 2e-47 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT5G66020 150 / 4e-38 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G51830 116 / 6e-27 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT3G59770 116 / 3e-26 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037446 [exp] 1558 / 0 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10027650 [exp] 984 / 0 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 889 / 0 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10014827 [exp] 673 / 0 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016697 [exp] 173 / 8e-46 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 152 / 1e-40 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 143 / 1e-35 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10025267 [exp] 117 / 5e-27 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10009080 [exp] 103 / 1e-22 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071300 [exp] 1111 / 0 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 1101 / 0 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 1038 / 0 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.006G136400 [exp] 997 / 0 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.019G080300 [exp] 665 / 0 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 663 / 0 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.005G100500 [exp] 137 / 8e-34 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 120 / 4e-28 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.013G128500 [exp] 92 / 1e-18 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10013184 pacid=23164178 polypeptide=Lus10013184 locus=Lus10013184.g ID=Lus10013184.BGIv1.0 annot-version=v1.0 ATGATCGGAAGGGACAAAAGCAGAACCTTTTGGAAGGTGTTAAAGATTGATCGGTCAGACCCATCTGAGTTAAATATAGTAGAAGATTCTACATCATACA GTGAAAGTGAATGCTGTGAATTGCTAAGGAGAATACATGAAGGGAATAAGTCAATTGGTGGATTGAAGTTTGTTACAGTTTGCTATGGAATAGTTGGGTT CATTAAATTTTTGGGGCCTTATTACATGCTGTTGATTACTCAAAGAAGGAAGATTGGTGCTATTTGCGGCCACCCAATCTATGCAATCACCAGGAGCGAG ATGATTCCAGTTCCCGTGCGGTCTAATATGACTATTTCTAAGAATGAGAACAGATACAAGAAGCTTCTTTGCTCGGTGGATCTTACAAGGGACTTCTTTT TCAGCTATTCATACAACATTATGCATAGTCTTCAAAAGAATTTATGTAATAATGAGACAGGAAAGCTCCATTACGAGACCATGTTCGTCTGGAATGAATT CTTAACTCGCGGGATCAGGGACAGCCTCCAAAGTTCTACCTGGACGGTAGCACTTGTACATGGATTCTTTAAACAGATCAAGCTATCGGTATCCGAGAGG GACTTTAAGCTGACTCTTATTGCTAGGAGATCACGGCACTATGCTGGAACCAGATATTTAAAGCGTGGAGTAAATGAGAAAGGAAGGGTTGCTAATGATG TCGAGACTGAACAAATCGTGTTTGAAGATTCTCCTGAAGGGTTTCCAGTGCAATTAAGTTCGGTTGTCCAGAACAGGGGCTCAATCCCACTTTTCTGGTC CCAGGAAACTTCAAGACTAAATATCCGACCAGATATTACACTGTCAAAGAAGGATAAAAACTATGAGGCGACCAAGCTTCATTTTGAAAATCTTGCCAAG AGATATGGGAATCCTATCATCATTTTAAATCTAATTAAGACGCATGAAACAAGGCCTCGAGAAAGTATACTTCGTGCAGAGTTTGCAAGTGCTATCAGGT TTATCAATACTAGTTTACCAAAAGAAGATCGTCTCAGATTTCTCCACTGGGATCTGAATAAACATTCTAGAAGAGGTACCAACGTATTGTCACTTCTAGG AAGAGTGGCTGCATATGCCTTGAACTTGACTGGCATCTTCTATTGTAACGTCTTATTGAGTCCCGGACCTGATGGATTGCCGTGCCAGACCTTAGAGAAA ATTGAGGGTTGCTCCAAGGAAAATCCTGTCGGTGAATTTGACAATTTGAGTGACAGTGCCTCAGGAACCAACTCTAATAGCGATGGGAAAGAAAGTTATA GGGACAAAGAGCCAACTCTTCAAACGGGAGTCTTAAGGACCAACTGCATTGACTGTTTGGATCGCACAAATGTTGCTCAATATGCTTATGGCTTGGCAGC TCTAGGAAGGCAGCTGGATGCACTTGGATATATGGAGTCCCCAAACATTGACCTGGATAACCCACTCGCAGAGAATTTGATGCGCCTATATGAATCAATG GGTGACACCCTTGCACACCAATATGGCGGGTCCGCTGCTCACAATAAGATATTTTCTGAAAGAAGAGGTCAATGGAAAGCTGCAACTCAGTCCCAAGAGT TCTTTAGAACTCTCCAGAGATATTACAGTAATGCATATGTGGACGCTCAAAAACAAGACGCCATTAATGTGTTCTTAGGTCACTTTCAACCTCAGCAAGG AAAGCCAGCTCTGTGGGAATTGGACTCGGATAACCATTACAATATAGGAGGGCGCAATCCTGATTTATTTGTAGCGGAATCCAGGTCATTATTTAAACGA TCAATGTCAGATGGCAATCTACTCTTTGACAATGAAAATGACTCGCTTGATGTTCCTACCAGAATCGGACAAAATATGCTGACTGATAAGCAACGAGGCG TCGATAAGGGCCTTTCAGACTCTAGTCCAGAGATCTCAACTTGTGATAGTGATATGTCATTCTCAAGGTTTACTCCATCGATGACTCCCAAGCAGCTCTT CGAAGAAGTAGAGGAAGAACAACGGGATCGCATTTGTTACGACGAACATGGAGATGCTTGTAGCTGCTCAAATTTTCTCGACTTGGACTGGCTTTCTTCG TCAGAAGTTTCATGTGAAGAAGATCCAAGCGAAAGGTCGATTGCAGGTCTATCTTCTGAGTATCTTGTGAATGAGGTCAGAACAGAGACGTCTTTAGCTG CAGCAAGCGAGGCCGGCTCTAGCTTGAAGGGAGGTTACCAAGCAGGAAGCAGTGAATTCGGGTGCAATGAGTTGCCCGGGTACTCGCAGCGGTTTGTACA CTGGGTGAACGATGGTGTGACGTTTCACTGA
AA sequence Show only first row Show all	>Lus10013184 pacid=23164178 polypeptide=Lus10013184 locus=Lus10013184.g ID=Lus10013184.BGIv1.0 annot-version=v1.0 MIGRDKSRTFWKVLKIDRSDPSELNIVEDSTSYSESECCELLRRIHEGNKSIGGLKFVTVCYGIVGFIKFLGPYYMLLITQRRKIGAICGHPIYAITRSE MIPVPVRSNMTISKNENRYKKLLCSVDLTRDFFFSYSYNIMHSLQKNLCNNETGKLHYETMFVWNEFLTRGIRDSLQSSTWTVALVHGFFKQIKLSVSER DFKLTLIARRSRHYAGTRYLKRGVNEKGRVANDVETEQIVFEDSPEGFPVQLSSVVQNRGSIPLFWSQETSRLNIRPDITLSKKDKNYEATKLHFENLAK RYGNPIIILNLIKTHETRPRESILRAEFASAIRFINTSLPKEDRLRFLHWDLNKHSRRGTNVLSLLGRVAAYALNLTGIFYCNVLLSPGPDGLPCQTLEK IEGCSKENPVGEFDNLSDSASGTNSNSDGKESYRDKEPTLQTGVLRTNCIDCLDRTNVAQYAYGLAALGRQLDALGYMESPNIDLDNPLAENLMRLYESM GDTLAHQYGGSAAHNKIFSERRGQWKAATQSQEFFRTLQRYYSNAYVDAQKQDAINVFLGHFQPQQGKPALWELDSDNHYNIGGRNPDLFVAESRSLFKR SMSDGNLLFDNENDSLDVPTRIGQNMLTDKQRGVDKGLSDSSPEISTCDSDMSFSRFTPSMTPKQLFEEVEEEQRDRICYDEHGDACSCSNFLDLDWLSS SEVSCEEDPSERSIAGLSSEYLVNEVRTETSLAAASEAGSSLKGGYQAGSSEFGCNELPGYSQRFVHWVNDGVTFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	0	1
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	1.0	0.9146
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	1.4	0.9093
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	3.7	0.8799
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	3.9	0.9086
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	5.1	0.8750
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10001137 [exp]	5.5	0.8553
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	6.6	0.9023
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	7.4	0.8762
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10018057 [exp]	7.7	0.8752
AT3G14460			LRR and NB-ARC domains-contain...		Lus10026132 [exp]	7.9	0.8658

Compare expression of checked genes

Lus10013184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.