Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53920 422 / 4e-147 GLIP5 GDSL-motif lipase 5 (.1) AT5G40990 310 / 4e-103 GLIP1 GDSL lipase 1 (.1) AT1G53940 308 / 1e-101 GLIP2 GDSL-motif lipase 2 (.1) AT3G14225 292 / 3e-96 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53990 283 / 5e-93 GLIP3 GDSL-motif lipase 3 (.1) AT1G71120 180 / 4e-53 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT1G54030 177 / 3e-51 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 166 / 1e-47 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 165 / 3e-47 GLIP7 GDSL-motif lipase 7 (.1) AT5G45950 157 / 3e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037447 [exp] 705 / 0 AT1G53920 430 / 4e-150 GDSL-motif lipase 5 (.1) Lus10003722 [exp] 169 / 6e-49 AT5G42170 298 / 3e-99 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003723 [exp] 167 / 2e-48 AT5G42170 308 / 1e-103 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013956 [exp] 165 / 3e-47 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 163 / 1e-46 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005279 [exp] 162 / 3e-46 AT5G45950 427 / 4e-150 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 161 / 5e-46 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 159 / 5e-45 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 159 / 6e-45 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071500 [exp] 416 / 9e-145 AT1G53920 436 / 3e-153 GDSL-motif lipase 5 (.1) Potri.003G071400 [exp] 329 / 8e-111 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.013G065100 [exp] 327 / 4e-110 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.018G063901 [exp] 289 / 6e-95 AT1G53920 302 / 4e-100 GDSL-motif lipase 5 (.1) Potri.017G134701 [exp] 283 / 1e-92 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G136601 [exp] 269 / 4e-87 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.017G134601 [exp] 265 / 8e-86 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.017G136501 [exp] 265 / 3e-85 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G137000 [exp] 264 / 6e-85 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.004G084366 [exp] 247 / 7e-79 AT5G40990 289 / 2e-95 GDSL lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10013185 pacid=23164139 polypeptide=Lus10013185 locus=Lus10013185.g ID=Lus10013185.BGIv1.0 annot-version=v1.0 ATGAACAGCCCAAATCACCAAACTTGGTTACAAATAGCAATACTAGCATTTCTCCTCATCTCTGCAACCTGCAGGGGGGCAGAGTACTCCGCCGTCGTCG GCCGGGAAAAACAGAGCAAGGTCGTCGGGTTCTTCCTGTTTGGAGACTCGTTCCTTGACGCGGGAAACAACAACTACATCAACACTACAACGCTCGACCA AGCCAACTTCTGGCCTTACGGCGAAACCTTCTTCCACTTCCCCACCGGCCGCTTCTCCGACGGCCGTCTCCTCTCCGACTTCATTGCGGAATATGCGAAG CTGCCGTTTATTCCGCCGTTCTTACGGCCGGGGAACAGAGTCAGCGACATTGCGGTCGGAGTCAACTTCGCATCCGCCGGCGCCGGCGCTCTTGTCGACA CTTTCCGTGGAGATGTGATTGATCTAAAGACGCAGTCGAAGAACATGAAGAAGGTGGAAAAATGGTTGGAGAAGAAGTTGGGGAAAGAGGAGACAAAGAG AAGAGTATCAAGAGCAGTTTACATGTTCAGCATTGGAACCAATGATTACATGAGCCCTTTTTTCACCAATTCTTCTGTTCCTTCTTCAAACTCCAGATTT GTTGCCATGGTGCTTGCCAATCTCACTGCAGTTGTCAGAGAGATATATGAGATGGGAGGGAGGAAGTTTGTGTTCATGAATGTGCCAACATTGGGTTGTC TACCTGCAATGAGACTACTGAACGAACACAGTGGAAAATCAAGGTGCTGGGAGGAGCAAGTTTCAGAGATGGCAAAGCTACACAATGATGCTCTTTCCAC AGTCCTTCTTCCCCAACTCACTAGGGAACTCAAAGGGTTCAAATACTCACTCTTTGATTTCAGCACAAGCCTCCACCTCAGGATGACCCATCCTTCCAAC TATGGGTTGAAGGAAGGCGAGGAGGCGTGTTGCGGGACAGGGGAATGGAGAGGCGTGTACAGCTGCGGAGGTAAAAGACCGGTGAAAGAGTTTCAAGTTT GCCAGAATCCTTATGAGTATGTGTTCTGGGACTCTTTCCATCTCACTGAAAATGTTTACAAGCAAATGGCGGCTGAGATATGGAATCCCCCACCGCTTTC CTCCGCCGGCGACGCCAACTCTCCGTCCAATTTCACCATTGTTGGCCCTTACACTCTCCACCAACTCTTCCACACCTAG
AA sequence Show only first row Show all	>Lus10013185 pacid=23164139 polypeptide=Lus10013185 locus=Lus10013185.g ID=Lus10013185.BGIv1.0 annot-version=v1.0 MNSPNHQTWLQIAILAFLLISATCRGAEYSAVVGREKQSKVVGFFLFGDSFLDAGNNNYINTTTLDQANFWPYGETFFHFPTGRFSDGRLLSDFIAEYAK LPFIPPFLRPGNRVSDIAVGVNFASAGAGALVDTFRGDVIDLKTQSKNMKKVEKWLEKKLGKEETKRRVSRAVYMFSIGTNDYMSPFFTNSSVPSSNSRF VAMVLANLTAVVREIYEMGGRKFVFMNVPTLGCLPAMRLLNEHSGKSRCWEEQVSEMAKLHNDALSTVLLPQLTRELKGFKYSLFDFSTSLHLRMTHPSN YGLKEGEEACCGTGEWRGVYSCGGKRPVKEFQVCQNPYEYVFWDSFHLTENVYKQMAAEIWNPPPLSSAGDANSPSNFTIVGPYTLHQLFHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	0	1
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	1.0	0.9260
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10029222 [exp]	1.4	0.9122
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	1.7	0.9095
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	2.8	0.9087
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006986 [exp]	3.7	0.8854
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	4.9	0.8880
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	8.0	0.8819
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017540 [exp]	9.9	0.8360
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	10.0	0.8960
AT5G25500			unknown protein		Lus10002031 [exp]	10.8	0.8706

Compare expression of checked genes

Lus10013185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.