Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02080 259 / 2e-90 Ribosomal protein S19e family protein (.1) AT5G61170 258 / 3e-90 Ribosomal protein S19e family protein (.1) AT5G15520 253 / 3e-88 Ribosomal protein S19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033532 [exp] 290 / 2e-102 AT3G02080 258 / 3e-90 Ribosomal protein S19e family protein (.1) Lus10020836 [exp] 287 / 2e-101 AT3G02080 258 / 5e-90 Ribosomal protein S19e family protein (.1) Lus10030702 [exp] 242 / 1e-83 AT3G02080 215 / 2e-73 Ribosomal protein S19e family protein (.1) Lus10010339 [exp] 239 / 3e-82 AT3G02080 219 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10000095 [exp] 239 / 3e-82 AT3G02080 219 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10032992 [exp] 236 / 2e-81 AT3G02080 218 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10021865 [exp] 235 / 3e-81 AT3G02080 216 / 7e-74 Ribosomal protein S19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118800 [exp] 259 / 1e-90 AT5G61170 269 / 2e-94 Ribosomal protein S19e family protein (.1) Potri.015G056100 [exp] 259 / 2e-90 AT5G61170 269 / 2e-94 Ribosomal protein S19e family protein (.1) Potri.017G092200 [exp] 256 / 3e-89 AT5G61170 270 / 5e-95 Ribosomal protein S19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01090 [flax] [poplar] Ribosomal_S19e Ribosomal protein S19e
Representative CDS sequence Show only first row Show all	>Lus10013188 pacid=23166649 polypeptide=Lus10013188 locus=Lus10013188.g ID=Lus10013188.BGIv1.0 annot-version=v1.0 ATGGCTGCTACAGGCGAAGTTATCAAGGCTGGCACTGTTAAGGATGTCTCACCCCATGAGTTCGTCAAGGCTTATGCCGCTCACCTCAAGCGATCTGGCA AGCTAGAGCTGCCACCATGGACTGACATTGTGAAGACCGGAAAACTGAAGGAGCTTGCACCTTATGATCCCGACTGGTATTACATTAGAGCTGCCTCAAT GGCAAGAAAGGTGTACCTGAGAGGAGGCCTTGGTGTGGGTGCTTTCCGAAGAATTTATGGTGGAAGCAAAAGGAATGGAAGCCGCCCTCCCCATTTCTGC AAGAGCAGCGGTGCTGTTGCTCGCCATATCCTTCAACAGCTAGAGAAGGTCAACATCGTCCAAGTTGATGCCAACGGTGGAAGGAAGATCACTTCAAACG GGCAGAGGGATCTGGACCAAGTTGCCGGGAGGATTATTGTTGTTGCTCCTTGA
AA sequence Show only first row Show all	>Lus10013188 pacid=23166649 polypeptide=Lus10013188 locus=Lus10013188.g ID=Lus10013188.BGIv1.0 annot-version=v1.0 MAATGEVIKAGTVKDVSPHEFVKAYAAHLKRSGKLELPPWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFC KSSGAVARHILQQLEKVNIVQVDANGGRKITSNGQRDLDQVAGRIIVVAP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02080			Ribosomal protein S19e family ...		Lus10013188 [exp]	0	1
AT1G74050			Ribosomal protein L6 family pr...		Lus10038776 [exp]	1.0	0.9510
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	1.4	0.9380
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035632 [exp]	1.7	0.9317
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10030344 [exp]	3.2	0.8962
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	4.6	0.9091
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	6.0	0.9100
AT5G48760			Ribosomal protein L13 family p...		Lus10011857 [exp]	6.3	0.9180
AT5G48760			Ribosomal protein L13 family p...		Lus10043151 [exp]	6.9	0.9193
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	10.2	0.8939
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012883 [exp]	11.3	0.8704

Compare expression of checked genes

Lus10013188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.