Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15470 904 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT3G01040 899 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G54690 558 / 0 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G58790 432 / 2e-146 GAUT15 galacturonosyltransferase 15 (.1) AT3G61130 363 / 5e-118 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 360 / 2e-117 GAUT4 galacturonosyltransferase 4 (.1) AT4G38270 342 / 1e-109 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 335 / 2e-108 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 330 / 8e-107 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 316 / 2e-101 GAUT10, LGT4 galacturonosyltransferase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030703 [exp] 989 / 0 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10032990 [exp] 948 / 0 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10015379 [exp] 835 / 0 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10035836 [exp] 555 / 0 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10036619 [exp] 434 / 2e-149 AT5G54690 636 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10009311 [exp] 368 / 7e-120 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 367 / 7e-120 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 368 / 8e-120 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10036540 [exp] 368 / 1e-118 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090800 [exp] 921 / 0 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.004G124500 [exp] 914 / 0 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.001G416800 [exp] 566 / 0 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.011G132600 [exp] 558 / 0 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.014G142000 [exp] 446 / 3e-152 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.016G001700 [exp] 366 / 2e-119 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 364 / 2e-119 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 358 / 5e-116 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 358 / 6e-116 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G246500 [exp] 338 / 1e-109 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10013189 pacid=23166663 polypeptide=Lus10013189 locus=Lus10013189.g ID=Lus10013189.BGIv1.0 annot-version=v1.0 ATGCAGCTTCACATCTCGCCTAGCATGAGAAGCATCACGATATCAAGCACTAACAACAACAACATCAGCGGCAGCACTAATGGGGGGTTTATTGACTTGA TGAAGATCAAGGTTGCAGCTCGCCACATCTCTTATCGCACTCTTTTCCACACCATCCTCATTCTTGCCTTCTTGTTGCCCTTTGTCTTCATCCTCACTGC CCTTGTCACCCTTGAAGGCGTCAACAACTGCTCCTCCTTTGATTGCTTGGGTAGACGACTTGGGCCAAGGCTTCTTGGCAGGGTCGATGACTCTGGGAGG CTGGTTAAGGACTTACACAAGATACTAAATCAAGTAAATGCAGAGGAAGTGCCGAATGGCTTAAAGCTCCCAGAATCGTTTAGTCAGCTTGTTTCAGAAA TGAAGAACAACCAATATGATGGAAAGACATTTGCTGTAACGTTGAAAGCGATGATGGAGAAATTTGAAAGGGAAATTAGGGAATCAAAATTTTCGGAGCT GATGAACAAACACTTCGCTGCAAGTTCCATTCCAAAAGGCATCCACTGTCTGTCTTTGCGATTGACGGATGAATATTCCTCTAATGCACATGCACGTAGG CAACTGCCTGCTCCAGAGTTGCTTCCTTTGTTGTCCGACAATACCTATCATCACTTCATACTGTCAACAGACAACATTTTGGCAGCATCAGTTGTTGTGA CTTCTACTGTGATGTCATCTAAAGAACCTGAAAAGATTGTATTTCATGTTATTACTGATAAGAAAACATATGCGGGGATGCACTCCTGGTTTGCGTTGAA CCCTGTCTCTCCGGCTATCATTGAAGTTAAAGGCGTTCATCAGTTTGACTGGTTAACAAGGGAGAATGTTCCTGTGCTTGAAGCTGTAGAAAATCATAAT AGCATCAGGAACTATTACCATGGGAATCATGTTGCTGGTGCGAATCTCAGCGAAACAACCCCACGTATATTTGCTTCAAAACTACAAGCTAGAAGTCCAA AGTACATCTCCTTGCTCAACCACCTCCGGATATATATACCTGAGCTATTTCCAAGCCTCAATAAGGTGGTCTTTTTGGACGATGATGTTGTGGTTCAGCG TGATTTGTCTCCACTTTGGGATATTGATCTGAAAGGAAAGGTTAATGGTGCTGTGGAAACATGTAAAGGTGATGATGAGTGGGTAATGTCCAAGCGGTTC AAGAACTATTTCAATTTTTCTCATCCCCTCATATCGAAGAACTTGGACGCGGAAGAGTGTGCTTGGGCTTATGGAATGAATATATTTGATCTTCATGCAT GGAGGAAGACGAGTATAAGGCACACATACCATTCCTGGTTGAGAGAGAATCTGAAGTCGAACCTGACGATGTGGAAGCTTGGAACCTTGCCTCCGGCTCT GATTGCATTTAAAGGTCATGTGCATGCAATTGATCCCGAGTGGCATATGCTTGGGTTGGGGTATCAGAATAAAACAGACATTGAGAGTGTCAAAAGGGCA GCAGTTATCCACTACAACGGGCAGTCAAAGCCATGGTTGCCGATCGGGTTTGAGCATCTGCGGCCATTTTGGACCAAGTACGTCAATTATGCTGATGATT TCATACGGAACTGCCACATCATGGAGACGTAG
AA sequence Show only first row Show all	>Lus10013189 pacid=23166663 polypeptide=Lus10013189 locus=Lus10013189.g ID=Lus10013189.BGIv1.0 annot-version=v1.0 MQLHISPSMRSITISSTNNNNISGSTNGGFIDLMKIKVAARHISYRTLFHTILILAFLLPFVFILTALVTLEGVNNCSSFDCLGRRLGPRLLGRVDDSGR LVKDLHKILNQVNAEEVPNGLKLPESFSQLVSEMKNNQYDGKTFAVTLKAMMEKFEREIRESKFSELMNKHFAASSIPKGIHCLSLRLTDEYSSNAHARR QLPAPELLPLLSDNTYHHFILSTDNILAASVVVTSTVMSSKEPEKIVFHVITDKKTYAGMHSWFALNPVSPAIIEVKGVHQFDWLTRENVPVLEAVENHN SIRNYYHGNHVAGANLSETTPRIFASKLQARSPKYISLLNHLRIYIPELFPSLNKVVFLDDDVVVQRDLSPLWDIDLKGKVNGAVETCKGDDEWVMSKRF KNYFNFSHPLISKNLDAEECAWAYGMNIFDLHAWRKTSIRHTYHSWLRENLKSNLTMWKLGTLPPALIAFKGHVHAIDPEWHMLGLGYQNKTDIESVKRA AVIHYNGQSKPWLPIGFEHLRPFWTKYVNYADDFIRNCHIMET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	0	1
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	1.4	0.8791
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10000962 [exp]	2.4	0.8207
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	4.9	0.8619
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	6.5	0.8613
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	9.9	0.7986
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	11.0	0.8336
AT3G01810			unknown protein		Lus10022341 [exp]	12.0	0.8271
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	12.8	0.7932
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	15.0	0.8147
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	15.5	0.7589

Compare expression of checked genes

Lus10013189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.