Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15610 578 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT3G02200 575 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030706 [exp] 791 / 0 AT5G15610 554 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10012120 [exp] 54 / 1e-07 AT4G19006 665 / 0.0 Proteasome component (PCI) domain protein (.1) Lus10010423 [exp] 51 / 1e-06 AT4G19006 651 / 0.0 Proteasome component (PCI) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G095300 [exp] 655 / 0 AT5G15610 575 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.004G116700 [exp] 654 / 0 AT5G15610 570 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10013192 pacid=23166672 polypeptide=Lus10013192 locus=Lus10013192.g ID=Lus10013192.BGIv1.0 annot-version=v1.0 ATGGCCACCATCGTCCCAACCTCCGAGGAAGATCCCGCCCTCGCAGTTGTCCGTTTCACCTCCGAGCTTGCCTGGGCTGATGCCGGTCCCGAGGTAGCGG AACCACAAGTTACCAGGCTATGTGTGGAGGCACAGGAATGCATGGTGATGGGCAGATGGTTGGACTTGGCCTCCTTGATGCTCACTTCAGCTGACTTGTT GTTCACCAATTCCCAGGCGTCAGAGAAAGACCTTGAATGCATCTTCACTGTCATTTGCAATCTTGTCACAAAGTCTCAAAACCCCGATGAAGCTCTTGAG ATGGTGAAGCTGATATCTTCAAAGATTGTTCAACAACCAACTGAGAAGCCTACATTGCGCTTAAAGATCTTGTTCAATCTGTACAATCTTCTAGAGGATC CATATGCACGGTTCTCTGTCTACATGAAGGTCTTGAGTTTAGCATTGAATGGAAAGGTCACAGAGCCCATTGTACCATCACTCAAGAAGATCGATAGTTT TTTGAAAGAATGGAATCTTAATGTCAAGGACCAGAGAGAGCTCTTTCTTGCCATCTCTAATGCACTTAAAGAGACTAAAAGCTCAACTAAAGATGGTTTC AAATTCCTGACAAAATACTTGGCAACTTTCTCTGGTGAGGATGCAATTGCTGAAGCCAAGGAGGAAGCAGTCCGTGCCATTGTTGAATTTGTGAAGGCAC CTGAGATGTTTCAGTGTGAGCTGTTAGATATGCCAGCCGTTGCCCAGTTGGAAAATGATGAAAAATATGCATTGGTGTATCAACTTCTAAAAGTATTCTT GACTCAGAGGCTTGACTCCTACTTTAAGTTTGAAGCAGTTAATTCTGCACTCCTGAAAAGCTACAACCTTGTTCATGAGGATTGCATAGCAAAGATGAGG TTGATGTCACTGGTGGATCTTGCATCTACCCCTTCTAGGAAAATCCCGTACGACCTTATCAAGGACACCCTCCAGGTTACTGATGATGAAGTGGAAATTT GGGTAGTAAAGGCAATCACTGCAAAGTTGATTGACTGCAAAATAGATCAGATGAATGAAGTTGTGCTTGTGAGCCGCTCCACCGAGCGCCTATTCGGGCA GCACCAGTGGGAAGAGCTTAGAGGGAAGCTTGCTACTTGGAGGGTGAATATTGCCAGTGTGATGAACACCATCCAAGCTAACAAGATCGCGGAAGATGGA ACACAGCAGGCTATCCAAGGTCTGGCTATTCGGTAG
AA sequence Show only first row Show all	>Lus10013192 pacid=23166672 polypeptide=Lus10013192 locus=Lus10013192.g ID=Lus10013192.BGIv1.0 annot-version=v1.0 MATIVPTSEEDPALAVVRFTSELAWADAGPEVAEPQVTRLCVEAQECMVMGRWLDLASLMLTSADLLFTNSQASEKDLECIFTVICNLVTKSQNPDEALE MVKLISSKIVQQPTEKPTLRLKILFNLYNLLEDPYARFSVYMKVLSLALNGKVTEPIVPSLKKIDSFLKEWNLNVKDQRELFLAISNALKETKSSTKDGF KFLTKYLATFSGEDAIAEAKEEAVRAIVEFVKAPEMFQCELLDMPAVAQLENDEKYALVYQLLKVFLTQRLDSYFKFEAVNSALLKSYNLVHEDCIAKMR LMSLVDLASTPSRKIPYDLIKDTLQVTDDEVEIWVVKAITAKLIDCKIDQMNEVVLVSRSTERLFGQHQWEELRGKLATWRVNIASVMNTIQANKIAEDG TQQAIQGLAIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15610			Proteasome component (PCI) dom...		Lus10013192 [exp]	0	1
AT5G41970			Metal-dependent protein hydrol...		Lus10008867 [exp]	1.4	0.8935
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10033546 [exp]	1.7	0.8686
AT4G15640			unknown protein		Lus10012810 [exp]	7.1	0.8561
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	9.0	0.8320
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	9.4	0.8614
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	10.7	0.8699
AT2G34040			Apoptosis inhibitory protein 5...		Lus10005277 [exp]	14.8	0.8277
AT1G64880			Ribosomal protein S5 family pr...		Lus10021785 [exp]	21.4	0.8195
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10028007 [exp]	22.4	0.8123
AT1G72550			tRNA synthetase beta subunit f...		Lus10020531 [exp]	22.8	0.7819

Compare expression of checked genes

Lus10013192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.