Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29770 462 / 2e-162 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G26360 385 / 1e-131 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT1G69240 384 / 6e-131 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT4G09900 278 / 1e-90 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT1G33990 277 / 2e-90 ATMES14 methyl esterase 14 (.1) AT5G58310 173 / 2e-51 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT2G23560 168 / 1e-49 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT3G10870 169 / 2e-49 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT4G16690 161 / 7e-47 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT4G37150 159 / 8e-46 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030707 [exp] 672 / 0 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10037068 [exp] 352 / 3e-119 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036917 [exp] 332 / 3e-107 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10005298 [exp] 295 / 2e-97 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10003511 [exp] 294 / 6e-97 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 253 / 5e-82 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10034253 [exp] 170 / 6e-50 AT3G10870 288 / 1e-97 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10029011 [exp] 170 / 7e-50 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10022467 [exp] 157 / 3e-45 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G096900 [exp] 566 / 0 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.004G116500 [exp] 565 / 0 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.008G096900 [exp] 380 / 3e-130 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.019G077400 [exp] 301 / 5e-100 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.013G104700 [exp] 298 / 1e-98 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.009G107500 [exp] 174 / 2e-51 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 173 / 2e-51 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107200 [exp] 171 / 4e-50 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036800 [exp] 169 / 5e-49 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.019G131100 [exp] 164 / 7e-48 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10013193 pacid=23166656 polypeptide=Lus10013193 locus=Lus10013193.g ID=Lus10013193.BGIv1.0 annot-version=v1.0 ATGGGGAACCTTTGCACTTGTTTCGCCCCCAAAACCACCGTCAAGAGTAACCGCCGACCGGTGAAGCGGCTACAGGGCGGCAATTCTTCATCCCATCAGC AACACCACAATCCAAACTCCAGTAACCGTTTTGCTAGGGTCCGATCCGCTAGAAAAGACAGCAACGATTCCTCAATTCAGGAGCAGGCTTTGGCCGCTGC TCTTCTGTTCAAGCAACACAACGGCGGAGGAGGTGGAGGGCTAGGCTCGTTGCCCTTTGACCGTTCTTCCTCCGTCAGATACCCTAATAGTCTAGGGTCC AAGAAGAATCCGTTGCCAAGAAGTTCAAGCTCCAGAGCTAGGTCACTTACTGATCCTTTGTTGGATCCTCACCAGTTAGTTAGCCAGGATGTGAAACTTG ACGATCTCGAGACCAAGCATTTTGTGCTTGTACATGGCGGGGGGTTTGGTGCTTGGTGTTGGTACAAAACTATAGCCCTTCTGGAAGAGAGTGGTTTCAG AGTTACGGCAATTGACTTGACAGGTTCTGGAGTTAGTTCTTTTGATACAAATGGCATCACCAGTCTTTCTCAATATGTGAAGCCGCTTACTGATTTCCTT GGAAAGCTTGCTGATGAGGAAAAGGTCATCTTGGTCGGGCACGATTTTGGCGGTGCTTGCATGTCATTTACAATGGAGTTGTTTCCACTCAAAATATCCA AGGCTATTTTTCTAGCTGCTGCTATGTTAGCTAATGGACAGAGCACTCTTGACATGTTCTCCAAGCAGGTTGCTGATTCTGTTACTAAAGAAAAGAAGTT ATTGCAGTCAGGTGGAGATGACCTAATGCGAAAGGCACAAGTTTTTGTATATGCAAATGGAAATGACCATCCTCCAACAGCAATTGATCTGAACAAGTCG TTGCTGCGAGACTTGATGTTCAACCAGAGCCCTGCCAAGGACATTGCATTAGCATCCGTATCAATGAGGCTCATCCCGTTCGCTCCAGTCTTGGAGAAGC TCTCCCTCTCCGATGCCAAGTACGGAACTGTCAGACGTTTCTACATCGAAACTCCAGAAGACAATGCCATACCGATCACCTTACAAGAGAGCATGATAAA CGCGAGTCCGCCAGAGAAGGTGTTCCGGTTAAAAGGCGGGGATCACTCGCCGTTCTTCTCAAAGCCTCAGGCATTGCACAAGATACTGATAGAGATTTCA AAGATATCATCATCAGTTGAAGATGAGAAAAAATAA
AA sequence Show only first row Show all	>Lus10013193 pacid=23166656 polypeptide=Lus10013193 locus=Lus10013193.g ID=Lus10013193.BGIv1.0 annot-version=v1.0 MGNLCTCFAPKTTVKSNRRPVKRLQGGNSSSHQQHHNPNSSNRFARVRSARKDSNDSSIQEQALAAALLFKQHNGGGGGGLGSLPFDRSSSVRYPNSLGS KKNPLPRSSSSRARSLTDPLLDPHQLVSQDVKLDDLETKHFVLVHGGGFGAWCWYKTIALLEESGFRVTAIDLTGSGVSSFDTNGITSLSQYVKPLTDFL GKLADEEKVILVGHDFGGACMSFTMELFPLKISKAIFLAAAMLANGQSTLDMFSKQVADSVTKEKKLLQSGGDDLMRKAQVFVYANGNDHPPTAIDLNKS LLRDLMFNQSPAKDIALASVSMRLIPFAPVLEKLSLSDAKYGTVRRFYIETPEDNAIPITLQESMINASPPEKVFRLKGGDHSPFFSKPQALHKILIEIS KISSSVEDEKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10013193 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Lus10029279 [exp]	5.3	0.7388
AT4G25030			unknown protein		Lus10041415 [exp]	8.4	0.7406
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	17.1	0.7045
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10022742 [exp]	20.1	0.6843
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	22.4	0.7132
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	25.1	0.7125
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	25.6	0.5513
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	38.0	0.6647
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	45.2	0.6922
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	46.5	0.6668

Compare expression of checked genes

Lus10013193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.