Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02125 69 / 7e-13 unknown protein AT5G39200 67 / 7e-13 unknown protein AT2G03630 67 / 7e-13 unknown protein AT1G74220 58 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030710 [exp] 201 / 2e-62 AT5G39200 71 / 3e-14 unknown protein Lus10029645 [exp] 114 / 3e-29 AT2G03630 62 / 4e-11 unknown protein Lus10032983 [exp] 98 / 2e-23 AT3G02125 59 / 6e-10 unknown protein Lus10021153 [exp] 66 / 9e-12 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10037082 [exp] 64 / 6e-11 AT2G03630 82 / 2e-17 unknown protein Lus10036900 [exp] 63 / 1e-10 AT2G03630 82 / 3e-17 unknown protein Lus10026665 [exp] 61 / 3e-10 AT2G03630 73 / 2e-14 unknown protein Lus10004647 [exp] 59 / 2e-09 AT2G03630 62 / 6e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094300 [exp] 88 / 7e-20 AT5G39200 70 / 3e-14 unknown protein Potri.004G120400 [exp] 79 / 1e-16 AT5G39200 68 / 1e-13 unknown protein Potri.010G158000 [exp] 75 / 1e-14 AT2G03630 108 / 7e-27 unknown protein Potri.008G096300 [exp] 71 / 1e-13 AT2G03630 91 / 2e-20 unknown protein Potri.012G061700 [exp] 59 / 1e-09 AT1G74220 91 / 1e-20 unknown protein Potri.015G057200 [exp] 54 / 3e-08 AT1G74220 77 / 9e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013196 pacid=23166619 polypeptide=Lus10013196 locus=Lus10013196.g ID=Lus10013196.BGIv1.0 annot-version=v1.0 ATGGAGGAGGGTAAACGAGGACAAAGCCTAGACGAGGATGATCATGATCACGAGGGTTCGATCAAGAGCAACGCCAGCAGCAACAACAGCACGAACTCTT CCCCACGACGACCCGAAACTCCATCCTTCGCATCCTCCGACGACGAACACCACACCGCGACACCAACCACGATCATAACCTACGATGGGTACGATCCCAC GAGGATCCCCTCGAGCGTGTTCGCCTCGAAATCGGGGAAGGGGATCGACTGGAGCGTGGCGTCCAACGAGTCGCTGTTCAGCATCCACATGGGCAACAAC AGCTTCTCTAGGGACCAAAACGCCATGCTCTACAAATCCGGAGAGCTTCCCATGCTTGACCAAGACGGTCAACCTCCGCCGACATCTTCCACGTGGCAGC CTCCGCTTCCTCCTTCCAGCCCGCTTCGGAGGAATAATAATAATAGTAATCCGCCGCCGCCAATCAACATTATGCATGTCCATGTCCATGTTCCTAACCA TAACAATGTTGTCACCTCTGCCGTAACAACTCTCCCGCCGCCAGAAGTAGTACCAGCCCCCGCCACCGTCAACAACACACCGGCGGTCACTAGAAATTCC ACAGCGAGCAGCGGCAGCAGCACCAAGTCTTTCCAGTTCCCAATATTGCAGCATGAACAAATGGGAAGGAACAACACCCAGAAAGTGGAAGGTGGTGCAG AGCAACGTTCAGAGAAGAAGACGGCGGAGGAGGAGGAGCGTAACGAAGAAGAGATGACACATCAGAATGAGAAACAATCAACAGAGGGAAAACAACAAAA GAAAGACAACCAGCAGCCAGGTACTTCAGGATCATGGACGAATTGCTTCGGTCGGAGTTCTTGGTTGGCATGCTTACCCTGTTTCCAGAAACCACCTACT AATACTACTTCATCATCTTCATTACAAGAAGTGAACTTTGGAAAGAAATCTAATGTTAATTCATGA
AA sequence Show only first row Show all	>Lus10013196 pacid=23166619 polypeptide=Lus10013196 locus=Lus10013196.g ID=Lus10013196.BGIv1.0 annot-version=v1.0 MEEGKRGQSLDEDDHDHEGSIKSNASSNNSTNSSPRRPETPSFASSDDEHHTATPTTIITYDGYDPTRIPSSVFASKSGKGIDWSVASNESLFSIHMGNN SFSRDQNAMLYKSGELPMLDQDGQPPPTSSTWQPPLPPSSPLRRNNNNSNPPPPINIMHVHVHVPNHNNVVTSAVTTLPPPEVVPAPATVNNTPAVTRNS TASSGSSTKSFQFPILQHEQMGRNNTQKVEGGAEQRSEKKTAEEEERNEEEMTHQNEKQSTEGKQQKKDNQQPGTSGSWTNCFGRSSWLACLPCFQKPPT NTTSSSSLQEVNFGKKSNVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02125			unknown protein		Lus10013196 [exp]	0	1
					Lus10005955 [exp]	1.0	0.9873
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	1.4	0.9473
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	1.7	0.9433
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	2.0	0.9258
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	3.5	0.8902
					Lus10004431 [exp]	3.7	0.8889
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	4.9	0.8797
AT3G24850	B3		Domain of unknown function (DU...		Lus10038802 [exp]	5.1	0.8572
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	5.5	0.9206
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Lus10019906 [exp]	6.0	0.8577

Compare expression of checked genes

Lus10013196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.