Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02300 683 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 125 / 4e-31 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 113 / 3e-27 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 110 / 3e-26 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT4G14368 110 / 4e-25 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 109 / 5e-25 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 108 / 1e-24 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 103 / 4e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G60870 101 / 4e-23 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT5G42140 102 / 8e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030712 [exp] 838 / 0 AT3G02300 717 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 126 / 2e-31 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 125 / 3e-31 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 114 / 1e-27 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10036737 [exp] 116 / 3e-27 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 114 / 1e-26 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042215 [exp] 109 / 1e-25 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10017581 [exp] 105 / 2e-24 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10035957 [exp] 104 / 3e-24 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099900 [exp] 721 / 0 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 129 / 2e-32 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 115 / 4e-28 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 115 / 7e-28 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 113 / 3e-26 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 108 / 1e-24 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 107 / 2e-24 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G070300 [exp] 103 / 6e-23 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 101 / 2e-22 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G000600 [exp] 98 / 7e-22 AT5G60870 534 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10013197 pacid=23166653 polypeptide=Lus10013197 locus=Lus10013197.g ID=Lus10013197.BGIv1.0 annot-version=v1.0 ATGGATATCAACCAAATTCTTGGGGAGAGCTCAAAGTCTGGAATCCTGCCCGCCAAGAGTGCCATTTATGCCTGGGGATATAATCACAGCGGCCAAACGG CAAGGAAAGGCGAAGAGCGGCAATTGCGGATCCCAAAGCAGCTTCCTCCTCACCTATTCGGCTGTCCAGCTCGCAACAATGCCCGCTGGCTGGATATTGC TTGTGGCCGGGAGCACACAACCGCCGTCGCTTCCGATGGCTCTCTTTTCACTTGGGGGGCTAATGAATTCGGTCAATTGGGAGATGGATCCGAAGAGGGC AGCAAGTACCCTAAGAGAGTAAAGCAATTAGAGTCTGAGTTTGTGAAATCTGTGTCGTGTGGGGCGCATTGCACTGCTGCTATTGCAGCACCTCGTGATA ACGATGGGACAATCTCAACAAGTAGACTATGGGTTTGGGGACAAAACCAGGGATCAAATTTGCCACGACTGTTTTGGGGTGCCTTCACACCGTACACGAA AATGCGACAGGTATCCTGTGGTGCAGCTCATGTGGTGGTCTTATCAGAAGACGGACTACTACAGGCCTGGGGATATAATGAACATGGGCAGCTAGGTCGA GGGGTTACTCGTGAAGGACTACAGCCGGCTCGAGTAATTACTGCTTATGCAAAGTTTCTTGATGATGCTCCAGAACTTGTGAAGATAACCCAAGTGTCAT GTGGAGAGTACCACTCAGCTGCCATATGTGAAATGGGCGAGGTGTATACTTGGGGCCTTGGAAGTATGGGTCAACTAGGGCACACTTCCCTTCAATCTGG GGATAAAGAGTTATTGCCTCGGCGAGTAGTTTCTCTTGATGGCATTGCCATAAAGGATGTTGCATGTGGAGGAGTTCATACTTGTGCAGTTAGTGAAAAC GGCGCACTTTATGCTTGGGGTGGTGGCCAAGCTGGTCAACTAGGCTTAGGACCCCAAGCTACGTCCTTTTCGTTCATTCCCAGCGATTCAGATTCCTTCC TCAGGAATCTCCCTGTTCTGGTTGTCCCTGATGGAGTGAAACTTGTAGCATGTGGGCATTCACATACACTTGCTTCTTTGAAGGATGGAAGGATCCATGG ATGGGGTTACAATAGTTATGGCCAGGCAGCGAACGAGAAATCAACATATGCTTGGTATCCATCACCGGTCGATTGGTGCGTAGGGGAAGTGAGGAAACTA GCTGCTGGAGGTGGCCATTCCGCTGTGCTGACTGATGCATGTTCCTTAAAAGAACTCTGCGAGTTTAGACTTGCGGATGAGGTAAAGTTATCAAATGCAT CGAAGATCGAAGATGTTGCGTCCAGGACCGGAGCGGACGCTTTAGCTCGTCTCTGTAAACGTCTGAGGTATAGTGATGTCCCATTCTCCGAAAACACATA TCGTTTTCCGATCAGAGATGCTGAAACCGATGACTGTTTTGTATCCACAGGCAGCATATGGCCGATATCGGAGATGAGGACTATGAAGATGTTGTAG
AA sequence Show only first row Show all	>Lus10013197 pacid=23166653 polypeptide=Lus10013197 locus=Lus10013197.g ID=Lus10013197.BGIv1.0 annot-version=v1.0 MDINQILGESSKSGILPAKSAIYAWGYNHSGQTARKGEERQLRIPKQLPPHLFGCPARNNARWLDIACGREHTTAVASDGSLFTWGANEFGQLGDGSEEG SKYPKRVKQLESEFVKSVSCGAHCTAAIAAPRDNDGTISTSRLWVWGQNQGSNLPRLFWGAFTPYTKMRQVSCGAAHVVVLSEDGLLQAWGYNEHGQLGR GVTREGLQPARVITAYAKFLDDAPELVKITQVSCGEYHSAAICEMGEVYTWGLGSMGQLGHTSLQSGDKELLPRRVVSLDGIAIKDVACGGVHTCAVSEN GALYAWGGGQAGQLGLGPQATSFSFIPSDSDSFLRNLPVLVVPDGVKLVACGHSHTLASLKDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKL AAGGGHSAVLTDACSLKELCEFRLADEVKLSNASKIEDVASRTGADALARLCKRLRYSDVPFSENTYRFPIRDAETDDCFVSTGSIWPISEMRTMKML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02300			Regulator of chromosome conden...		Lus10013197 [exp]	0	1
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	2.2	0.9015
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	6.7	0.8796
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10035042 [exp]	8.8	0.8983
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	12.1	0.8777
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017704 [exp]	14.1	0.8745
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	14.5	0.8735
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	14.9	0.8692
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10038368 [exp]	15.7	0.8125
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10018466 [exp]	18.0	0.8661
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10032801 [exp]	18.0	0.8031

Compare expression of checked genes

Lus10013197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.