Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21080 581 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 560 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G77020 409 / 1e-141 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 363 / 3e-124 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 362 / 9e-124 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G48030 70 / 7e-13 GFA2 gametophytic factor 2 (.1) AT1G28210 69 / 9e-13 ATJ1 DNAJ heat shock family protein (.1.2) AT2G22360 69 / 1e-12 DNAJ heat shock family protein (.1) AT1G59725 68 / 2e-12 DNAJ heat shock family protein (.1) AT4G39960 67 / 9e-12 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030713 [exp] 818 / 0 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 410 / 4e-142 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028809 [exp] 373 / 3e-128 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 373 / 4e-128 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10029744 [exp] 359 / 7e-122 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10041972 [exp] 355 / 5e-121 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 347 / 7e-118 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10035855 [exp] 75 / 3e-14 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 74 / 6e-14 AT5G48030 516 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G000300 [exp] 664 / 0 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G260400 [exp] 655 / 0 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 419 / 7e-146 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 411 / 2e-142 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.009G119800 [exp] 356 / 1e-121 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 350 / 2e-119 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.001G271300 [exp] 77 / 5e-15 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 73 / 8e-14 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.003G031800 [exp] 68 / 3e-12 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 67 / 5e-12 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10013198 pacid=23166679 polypeptide=Lus10013198 locus=Lus10013198.g ID=Lus10013198.BGIv1.0 annot-version=v1.0 ATGGTAAAGGAGACGGAATACTATGATGTGCTTGGAGTCAGTCCGACGGCCACTGAGGCCGAGATTAAGAAAGCTTATTACGTGAAGGCACGGCAAGTGC ACCCGGATAAAAACCCTAATGATCCTTTGGCTGCACAGAATTTCCAGGCAAGTTTTGTCCTGGGAGAAGCGTACCAAGTATTGAGTGATAATGCCCAGAG AGAAGCATATGATGCTTATGGGAAGTCTGGAATATCAACTGACGCAATTATCGACCCTGCAGCGATATTTGCCATGCTTTTTGGTAGTGAGCTTTTTGAA GATTACATTGGGCAGCTCGCCATGGCATCTATGGCTTCATCGGACCTTTTTGCAGAGGGGGAACAAGTTGATACCAGGAAGCTACAAGAAAAAATGAGGG TTGTTCAGAAGGAGAGAGAAGAGAAGCTGGCACAAATACTGAAAGATCGACTCAACCAATACGTACAGGAAAAAGAAGAGTTTGTTAAGTATGCCGAGTC TGAAGTAACTAGGCTCTCAAATGCAGCTTATGGTATTGACATGTTGAACACGATTGGCTACATTTATGCCAGACAAGCAGCCAAAGAGCTGGGCAAGAAG GCTATATATTTGGGTGTTCCGTTTGTTGCTGAATGGTTTAGAAACAAAGGGCACTTCATCAAGTCCCAAGTCACTGCAGCAACAGGTGCCCTTGCCTTGA TGCAGTTGCAAGAAGATATGAAAAAGCAGCTCAATGCTGAAGGTACATATACAGAAGAAGAGCTTGAACAATACATGCAGGCTCATAAGAAGACGATGAT TGACTCACTGTGGAAGCTTAATGTGGCAGACATTGAGGCCACACTTTCTCGTGTTTGCCAGATGGTTCTTCAAGAGACTGGAGTCAAGAAAGAGGAGCTT CGCTCACGAGCAAAGGCATTAAAGACTCTTGGTAAAATCTTTCAGAGCGTATCATTGGGCAATGGAAGCGAGGGTCAAATTAATGCAGACAGTGGCGTTC ATAAGCTGCATGGAAACGAATCAAGCAATGAACCATGTTCTCCTACCACATCCCCAAAGCACGCCAGTCCTCAAGAACAATCCTATAGCACATTGTCTTC ACAGAGTCCGTATGTGGAGGCTCCGCAGGTTGCTGGAAGTCATTTTAACTACGACTTCCCAAGGCCAACAGCTCCACCTGGTGCTAATAGATATTCTTCA TCCGGCGGCGAGGGTGCAAATCATTGA
AA sequence Show only first row Show all	>Lus10013198 pacid=23166679 polypeptide=Lus10013198 locus=Lus10013198.g ID=Lus10013198.BGIv1.0 annot-version=v1.0 MVKETEYYDVLGVSPTATEAEIKKAYYVKARQVHPDKNPNDPLAAQNFQASFVLGEAYQVLSDNAQREAYDAYGKSGISTDAIIDPAAIFAMLFGSELFE DYIGQLAMASMASSDLFAEGEQVDTRKLQEKMRVVQKEREEKLAQILKDRLNQYVQEKEEFVKYAESEVTRLSNAAYGIDMLNTIGYIYARQAAKELGKK AIYLGVPFVAEWFRNKGHFIKSQVTAATGALALMQLQEDMKKQLNAEGTYTEEELEQYMQAHKKTMIDSLWKLNVADIEATLSRVCQMVLQETGVKKEEL RSRAKALKTLGKIFQSVSLGNGSEGQINADSGVHKLHGNESSNEPCSPTTSPKHASPQEQSYSTLSSQSPYVEAPQVAGSHFNYDFPRPTAPPGANRYSS SGGEGANH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10013198 [exp]	0	1
AT1G63810			unknown protein		Lus10014305 [exp]	5.8	0.9599
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10014708 [exp]	18.6	0.9554
					Lus10040445 [exp]	20.2	0.9591
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	21.2	0.9552
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	25.0	0.9487
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	26.2	0.9588
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	29.0	0.9431
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	30.7	0.9571
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	32.0	0.9554
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	32.6	0.9145

Compare expression of checked genes

Lus10013198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.