Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76520 95 / 6e-23 Auxin efflux carrier family protein (.1.2) AT1G76530 89 / 7e-21 Auxin efflux carrier family protein (.1) AT2G17500 84 / 7e-19 Auxin efflux carrier family protein (.1.2.3.4) AT1G20925 84 / 8e-19 Auxin efflux carrier family protein (.1) AT5G65980 71 / 2e-14 Auxin efflux carrier family protein (.1) AT1G71090 59 / 3e-10 Auxin efflux carrier family protein (.1) AT5G01990 42 / 0.0002 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030715 [exp] 202 / 8e-64 AT1G20925 295 / 6e-96 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 134 / 1e-37 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10016046 [exp] 129 / 1e-35 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10004287 [exp] 84 / 7e-19 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 82 / 2e-18 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 83 / 3e-18 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019229 [exp] 82 / 4e-18 AT5G23490 667 / 0.0 unknown protein Lus10001303 [exp] 80 / 1e-17 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 77 / 1e-16 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003500 [exp] 108 / 1e-27 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.005G099300 [exp] 89 / 1e-20 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.001G456400 [exp] 83 / 2e-18 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.001G456300 [exp] 81 / 6e-18 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G125501 [exp] 80 / 2e-17 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 78 / 7e-17 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 78 / 8e-17 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 65 / 3e-12 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.004G093200 [exp] 59 / 4e-10 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 52 / 6e-08 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013200 pacid=23166589 polypeptide=Lus10013200 locus=Lus10013200.g ID=Lus10013200.BGIv1.0 annot-version=v1.0 ATGATTCAATTAATTGATGCTACGTTACTGCATGTGCATGCAGGTGGTGTTCCACGTGTTCAACCCAGCACTGATGGTGGCCAGCCTGTCGACGACCATC ACCTGGGAGCAGCTGGCGAAAAAGCTGTGATTGTTGGACTGGTGATCGCGCTAATCACACCACTAACGAACATGTTGGTGGGCGATGAAGCACCACTTCG AGCTATTCAAGATAGCATTGTTCTTTTAGGAAAGCAACCATCCCCAGTCTCACCCTTCTTGTCGGAGCTAACTTACTCAGAGACGGTGATATTAGGGATA TTAATTGCTCGATATCTGGCGTTGCCTCTGGTGGGAATACTGGTGGTTAAAGGAGCTCTGCGTTTCGGTTTCATTCCATCATCAGATCCTCTTTACCAGT TCGTCCTTCAGTTCACCATCCCCCCTGCAATGAACATTGGGCTGAGTAATAACGCAGTTGTTCGGAGAAGGAGAGTCGGAGTGTTCGTTGATCATGCTAT GGACTCACGCCTTAGCTTCCGTCTCTCTAACCCTCTGGTCCACCTGCTTCATGTGGCTCGTCCCCCCTTCCTGATCTATATGATACTACTTCACAAGTGT ATATGA
AA sequence Show only first row Show all	>Lus10013200 pacid=23166589 polypeptide=Lus10013200 locus=Lus10013200.g ID=Lus10013200.BGIv1.0 annot-version=v1.0 MIQLIDATLLHVHAGGVPRVQPSTDGGQPVDDHHLGAAGEKAVIVGLVIALITPLTNMLVGDEAPLRAIQDSIVLLGKQPSPVSPFLSELTYSETVILGI LIARYLALPLVGILVVKGALRFGFIPSSDPLYQFVLQFTIPPAMNIGLSNNAVVRRRRVGVFVDHAMDSRLSFRLSNPLVHLLHVARPPFLIYMILLHKC I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76520			Auxin efflux carrier family pr...		Lus10013200 [exp]	0	1
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	3.5	0.9971
AT1G04670			unknown protein		Lus10004041 [exp]	4.9	0.9971
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017701 [exp]	5.1	0.9558
					Lus10040397 [exp]	6.0	0.9971
					Lus10006918 [exp]	6.9	0.9971
					Lus10007508 [exp]	7.7	0.9971
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	8.5	0.9971
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	9.2	0.9971
					Lus10027066 [exp]	9.8	0.9971
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	10.4	0.9971

Compare expression of checked genes

Lus10013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.