Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33630 688 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G47290 195 / 1e-57 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G26260 184 / 6e-52 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) AT2G43420 119 / 8e-29 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT4G33360 52 / 4e-07 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 45 / 9e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G30620 45 / 0.0001 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G44480 43 / 0.0005 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030720 [exp] 923 / 0 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010311 [exp] 167 / 8e-46 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 164 / 2e-44 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10000358 [exp] 93 / 2e-21 AT1G47290 298 / 3e-101 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) Lus10020776 [exp] 57 / 2e-08 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10004028 [exp] 43 / 0.0004 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005100 [exp] 744 / 0 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G005201 [exp] 293 / 2e-97 AT2G33630 277 / 1e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G218400 [exp] 179 / 4e-50 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.007G131200 [exp] 117 / 3e-28 AT2G43420 501 / 3e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Potri.002G127500 [exp] 46 / 4e-05 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 44 / 0.0002 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.005G257700 [exp] 42 / 0.0008 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10013202 pacid=23166603 polypeptide=Lus10013202 locus=Lus10013202.g ID=Lus10013202.BGIv1.0 annot-version=v1.0 ATGCATCTCAGCGAGAATGAAGGCATAGAACACAAAGTGTTCGTCGTCACCGGCGGGTTGGGCTTCGTAGGTTCCGCACTCTGTCTCGACCTGGTTCGCA GAGGAGCTCGTCAAGTCCGCGTCTACGATCTCCGTTCAACTTCTCCGTGGTATCAGTCTCTATCCTCCAGCGGAGTTCAATGCATCCAAGGTGACGTTAC CAACCAGAAGGATGTAGAGAAGGCCATTTGCGGTGCCGATTGTGTCTTCCATTTAGCGTCCTATGGCATGTCTGGGAAAGAAATGCTGCAGTTCGGCCGA GTTGACGAGGTCAACATCAATGGAACTTGTCATGTTTTGGAAGCTTGCCTTGAGAATGGCGTCAAGAGGCTTGTTTACGTCAGTACATACAATGTTGTGT TTGGAGGGAAGGAGATTGTCAATGGGAATGAGGCTCTTCCTTACTTCCCTCTGGATGATCATGTCGATTCATATGGACGTACGAAGTCGATTGCTGAGCA GTTAGTACTCAAGTACAGCGGCCGTCCGTTTAAGAAGAATAGCAGCGGACACCTATATACTTGTGCAGTCCGTCCAGCAGCCATCTATGGACCGGGAGAA GACAGGCATCTTCCGAGGATCGTATCTCTGGCTAAACTGGGTCTGATTCCTTTCAGAATTGGCGATTCAAGTGTGAAATCGGACTGGGTTTATGTGGATA ACCTTGTCATTGCCTTGGTACTTGCAAGCATGGGACTTTTAGATGACATTCCAGGCAGAGAAGGTCGTCCGGTTGCCTCTGGCCAAGCATACTTTATCTG TGATGGTTCTCCAATCAACAGTTTTGAATTCCTCCAATCTCTTCTCAGAGGTCTAGAATATGATTTACCAAAGGCCTCTTTGCCAGTCCCTCAGGCCCTT GTTCTGGCAAAGGTTTTCGGAGTTGTGTATACAATGTTATATCCATGGTTGAAGCATAAGTGGCTTCCTGAGCCGTTGATCCTTCCCGCTGAAGTATACA AGGTTGGTGTTACGCACTACTTTTCGTACCTGAAGGCGAAGCAAGAACTCGGATATGTCCCGATGGTAACACCTAAAGAGGGGATGGCTGCGACAGTTTC CTACTGGCAAAAGAAGAAAAGGGAATCAGTGGATGGACCGACAATATACGCATGGCTTTTCGTCATGATCGGAATGTTCATAGTCTTGAGTTCTGCAGTT TTGCCGGATCTAGGACCAGTGTCCCCAATGAGAGCTCTGTGCCTCTTCTTCTTTAGGTCGATGTTGGTTCTTAGAATGGTAGCTTTGTCAGCAACAGCAG CACATGTATTGGAAGGCATGTACGCTTGGAAGCTGGCTAAGAAAGTGGATCCTGCAAACGCCAAGGCATGGTTTTGGCAGACATTTGCTCTCGGTTTCTT TTCTCTACGTTTACTTTTGAAAAGAGCCAAGAATGAGGCTTAG
AA sequence Show only first row Show all	>Lus10013202 pacid=23166603 polypeptide=Lus10013202 locus=Lus10013202.g ID=Lus10013202.BGIv1.0 annot-version=v1.0 MHLSENEGIEHKVFVVTGGLGFVGSALCLDLVRRGARQVRVYDLRSTSPWYQSLSSSGVQCIQGDVTNQKDVEKAICGADCVFHLASYGMSGKEMLQFGR VDEVNINGTCHVLEACLENGVKRLVYVSTYNVVFGGKEIVNGNEALPYFPLDDHVDSYGRTKSIAEQLVLKYSGRPFKKNSSGHLYTCAVRPAAIYGPGE DRHLPRIVSLAKLGLIPFRIGDSSVKSDWVYVDNLVIALVLASMGLLDDIPGREGRPVASGQAYFICDGSPINSFEFLQSLLRGLEYDLPKASLPVPQAL VLAKVFGVVYTMLYPWLKHKWLPEPLILPAEVYKVGVTHYFSYLKAKQELGYVPMVTPKEGMAATVSYWQKKKRESVDGPTIYAWLFVMIGMFIVLSSAV LPDLGPVSPMRALCLFFFRSMLVLRMVALSATAAHVLEGMYAWKLAKKVDPANAKAWFWQTFALGFFSLRLLLKRAKNEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10013202 [exp]	0	1
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	2.2	0.7688
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	4.8	0.7013
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10015974 [exp]	9.4	0.6551
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	13.6	0.7535
AT5G10110			unknown protein		Lus10022498 [exp]	15.3	0.7583
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	17.9	0.7356
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10028437 [exp]	17.9	0.6934
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	18.3	0.7440
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	18.4	0.7490
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	19.1	0.7210

Compare expression of checked genes

Lus10013202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.