Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20850 509 / 0 XCP2 xylem cysteine peptidase 2 (.1) AT4G35350 501 / 2e-179 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G43060 364 / 6e-124 Granulin repeat cysteine protease family protein (.1) AT1G47128 358 / 1e-121 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G50260 345 / 1e-117 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 345 / 9e-117 Granulin repeat cysteine protease family protein (.1) AT1G09850 332 / 9e-112 XBCP3 xylem bark cysteine peptidase 3 (.1) AT3G48340 330 / 9e-112 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT4G36880 330 / 1e-111 CP1 cysteine proteinase1 (.1) AT4G11310 325 / 1e-109 RD21A, RD21 Papain family cysteine protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030722 [exp] 694 / 0 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10033040 [exp] 358 / 9e-123 AT5G50260 555 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10013674 [exp] 356 / 6e-122 AT5G50260 554 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10024801 [exp] 357 / 7e-121 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10042078 [exp] 349 / 3e-119 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10018083 [exp] 348 / 5e-119 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10002827 [exp] 347 / 5e-117 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 347 / 8e-117 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10032406 [exp] 340 / 6e-116 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G256000 [exp] 542 / 0 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.002G005700 [exp] 530 / 0 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.004G207600 [exp] 511 / 0 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.014G024100 [exp] 366 / 1e-124 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 359 / 5e-123 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.012G090900 [exp] 358 / 9e-123 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.001G302100 [exp] 355 / 6e-120 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 352 / 4e-119 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.015G087400 [exp] 346 / 5e-118 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.004G056258 [exp] 343 / 4e-117 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10013204 pacid=23166622 polypeptide=Lus10013204 locus=Lus10013204.g ID=Lus10013204.BGIv1.0 annot-version=v1.0 ATGGCCTCCAACAACACACTCTTCCTCTTCCTCTTCCTTGCTATGGCCACCCTCATTGGCGTCTCGGCCCGCGACTTCTCCATAGTGGGCTACTCCGACG ACGACTTGACATCCACCGATAAGATGGTGGACCTGTTCGAGTCGTGGATGGACAAGCACGGCAAAATGTACGAGACCATCGAGGAGAAGCTCAAAAGGTT CGACATCTTCAAGGACAACCTCTTCCACATCGACGAGACCAACAAGAAGGTCACCAACTATTGGCTAGGACTCAATGAGTTCGCTGACTTGAGCCACCAC GAGTTCAAGAGCATGTACCTTGGCCTCAAACCTCCCACCACTTTGACAAGAAGGGAGTCAAATGTAGAGGAGTATGAGGCGGTTGAGAGTAATGTTCCCA AGGCGGTGGACTGGAGGAAGAAGGGAGCCGTGACTCCGGTCAAGAACCAAGGCTCGTGCGGAAGTTGTTGGGCATTCTCCACAGTTGCAGCCGTCGAAGG AATCAACCAGATCGTTACGGGGAACCTGACTTCCCTTTCGGAGCAGGAGCTTATTGATTGTGACAAGGGTACTTACAACAATGGTTGCAATGGTGGTCTT ATGGACTATGCTTTTGCTTACATTGCTTCCAATGGTGGACTTCACAAGGAGGAGGATTACCCTTACATCATGGAAGAGGGCACCTGCGAGATGACCAAAG ACGTGGACTCGGAAGTGGTAACGATTAGCGGGTACAAGGATGTGCCGTCGAACAACGAGCAGAGTCTGATCAAGGCGTTGGCTAAGCAGCCATTGAGTGT GGCCATTGATGCATCTGGGAGGGAGTTCCAATTCTACAGTGGGGGAGTGTTCGACGGGAAGTGCGGGACAAGTCTGGACCATGGGGTGGCAGCGGTTGGC TACGGGTCGAGCGGGAAAGGGAACGACTTCATCGTTGTGAAGAACTCGTGGGGGACCAAATGGGGAGAACAAGGCTACATCAGGATGAAGAGGAACACCG GCAAGGCTGAAGGTCTTTGTGGCATCAACAAGATGGCTTCCTATCCTACTAAATCCAAATGA
AA sequence Show only first row Show all	>Lus10013204 pacid=23166622 polypeptide=Lus10013204 locus=Lus10013204.g ID=Lus10013204.BGIv1.0 annot-version=v1.0 MASNNTLFLFLFLAMATLIGVSARDFSIVGYSDDDLTSTDKMVDLFESWMDKHGKMYETIEEKLKRFDIFKDNLFHIDETNKKVTNYWLGLNEFADLSHH EFKSMYLGLKPPTTLTRRESNVEEYEAVESNVPKAVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDKGTYNNGCNGGL MDYAFAYIASNGGLHKEEDYPYIMEEGTCEMTKDVDSEVVTISGYKDVPSNNEQSLIKALAKQPLSVAIDASGREFQFYSGGVFDGKCGTSLDHGVAAVG YGSSGKGNDFIVVKNSWGTKWGEQGYIRMKRNTGKAEGLCGINKMASYPTKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	0	1
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	1.4	0.9953
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	1.4	0.9946
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	1.7	0.9932
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	2.2	0.9908
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	2.8	0.9920
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	5.3	0.9893
AT1G10800			unknown protein		Lus10041270 [exp]	6.0	0.9875
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	6.9	0.9889
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	6.9	0.9897
AT4G18425			Protein of unknown function (D...		Lus10015394 [exp]	6.9	0.9543

Compare expression of checked genes

Lus10013204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.