Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76420 256 / 1e-82 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G53950 229 / 8e-72 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G61430 222 / 2e-69 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT3G15170 221 / 3e-69 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 220 / 6e-69 NAC ANAC058 NAC domain containing protein 58 (.1) AT5G39610 219 / 7e-69 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT5G07680 220 / 8e-69 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT2G24430 218 / 5e-68 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT5G18270 217 / 2e-67 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT3G29035 215 / 4e-67 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030723 [exp] 568 / 0 AT1G76420 243 / 1e-77 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10005537 [exp] 234 / 1e-74 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10041924 [exp] 219 / 6e-70 AT5G53950 281 / 9e-95 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10021659 [exp] 221 / 3e-69 AT5G61430 361 / 8e-125 NAC domain containing protein 100 (.1) Lus10001648 [exp] 221 / 5e-69 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1) Lus10009669 [exp] 217 / 2e-67 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10009029 [exp] 216 / 4e-67 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10020165 [exp] 217 / 1e-66 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10026879 [exp] 215 / 2e-66 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005800 [exp] 295 / 4e-97 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G255900 [exp] 288 / 1e-94 AT1G76420 295 / 4e-98 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.019G031600 [exp] 228 / 3e-71 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.017G086200 [exp] 226 / 1e-70 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.011G115400 [exp] 226 / 1e-70 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.015G046800 [exp] 224 / 2e-70 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.012G056300 [exp] 224 / 2e-70 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.012G001400 [exp] 224 / 7e-70 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.006G277000 [exp] 223 / 1e-69 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.013G054200 [exp] 224 / 2e-69 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10013205 pacid=23166640 polypeptide=Lus10013205 locus=Lus10013205.g ID=Lus10013205.BGIv1.0 annot-version=v1.0 ATGGAGGAAATGCGGCAGCTATGCGAAGCAGCAGCGGGAGAAGCAGTAGAAGATGTGAACGAGCATGGTCTCCCACCCGGCTTCAGGTTCCACCCTACCG ACGAAGAGCTCATCACTTTCTACCTTGCTTCCAAGGTCTTCCATGGCTCCTTCTGCGGCGTCCAGATCGCCGAAATCGACCTCAACCGCTGCGAGCCCTG GGACCTCCCCGACGTGGCGAGGATGGGGGAGAAGGAATGGTACTTCTTCAGCTTGAGGGACAGGAAGTACCCAACTGGGTTGAGGACCAACCGGGCCACC GGAGCCGGCTACTGGAAGGCCACCGGCAAGGACAGAGAAGTCTACAGCAGCAGTGCCGGCGGAGGCGGCGGCGGCGGAGGAGGGATGACGTGGAATAATA GTCATAATAAAATGCTGTTGGGGATGAAGAAAACCCTTGTGTTCTACAAAGGAAGGGCTCCAAGAGGTGAAAAGACCAAATGGGTCATGCACGAGTACCG GCTCGACGGCCACTTCTCCTACCGCTCTACTTCCTCCAACCACCACTCTTCTTCCTCCTCCGCTAAGGAGGAATGGGTGATATGCCGGATATTTCACAAG ACTGTGGAGAAGAAGAATGGAGGGATGTTATTCCAGCTCCAAGGGCTTCAGGAGCTAGCAGCACTGCACGATTACCCTCAAAATTCTCCACCACCGGTGG GTTGCTTGCCGCCTTTACTGGAAGCCGCCGCAGCTTGTTCCTCCTCACCCTGGGAATTATTATGTCATCATCGCCCCAATAACCCTCCTGGTTTCCTCAC TACTACCCATCCATTGCTACTTACACACAACGTCAACGAAGACGTGACTGCTGACCAGGACGACAACGACCTTAAGACCATATTGAGCCAGGCAGTCAAT GTGAAGAACAACAACTGCCACGTCATGAGTACTCCCACTGATGTTCTCAAACATTGCAAGAAGGAGGATGCCAATATTGATCAGCAAGTACCTGGACTTG GCTGGCAGAACTATCCGAACCCTTTGATGCCGTACATTAATATCGACGGTCAGGAATCGGGGGGTTTCCATATGATGTTAGATCATGCTCCCACTAGTAC TACTACTAGTCAGTCTTGTTTTGGTCTCGGAGGAGATACTTGGTCGTCGCTCATGGGTCACGCCTGGCCTGCCCACCCGCTTAATTAG
AA sequence Show only first row Show all	>Lus10013205 pacid=23166640 polypeptide=Lus10013205 locus=Lus10013205.g ID=Lus10013205.BGIv1.0 annot-version=v1.0 MEEMRQLCEAAAGEAVEDVNEHGLPPGFRFHPTDEELITFYLASKVFHGSFCGVQIAEIDLNRCEPWDLPDVARMGEKEWYFFSLRDRKYPTGLRTNRAT GAGYWKATGKDREVYSSSAGGGGGGGGGMTWNNSHNKMLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGHFSYRSTSSNHHSSSSSAKEEWVICRIFHK TVEKKNGGMLFQLQGLQELAALHDYPQNSPPPVGCLPPLLEAAAACSSSPWELLCHHRPNNPPGFLTTTHPLLLTHNVNEDVTADQDDNDLKTILSQAVN VKNNNCHVMSTPTDVLKHCKKEDANIDQQVPGLGWQNYPNPLMPYINIDGQESGGFHMMLDHAPTSTTTSQSCFGLGGDTWSSLMGHAWPAHPLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	0	1
AT1G73620			Pathogenesis-related thaumatin...		Lus10031346 [exp]	1.7	0.9943
AT1G54215			proline-rich family protein (....		Lus10037669 [exp]	1.7	0.9947
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10036953 [exp]	3.6	0.9887
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	3.7	0.9945
					Lus10021217 [exp]	4.5	0.9934
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	4.9	0.9915
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	5.2	0.9909
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	5.5	0.9909
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	6.5	0.9924
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	6.9	0.9905

Compare expression of checked genes

Lus10013205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.