Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24830 724 / 0 arginosuccinate synthase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012800 [exp] 781 / 0 AT4G24830 777 / 0.0 arginosuccinate synthase family (.1.2) Lus10033978 [exp] 776 / 0 AT4G24830 767 / 0.0 arginosuccinate synthase family (.1.2) Lus10030725 [exp] 215 / 5e-69 AT4G24830 195 / 4e-61 arginosuccinate synthase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G239000 [exp] 748 / 0 AT4G24830 754 / 0.0 arginosuccinate synthase family (.1.2) Potri.008G020200 [exp] 747 / 0 AT4G24830 761 / 0.0 arginosuccinate synthase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00764 [flax] [poplar] Arginosuc_synth Arginosuccinate synthase
Representative CDS sequence Show only first row Show all	>Lus10013207 pacid=23166590 polypeptide=Lus10013207 locus=Lus10013207.g ID=Lus10013207.BGIv1.0 annot-version=v1.0 ATGCCAACTATTCACAGTCTTTGTTTGCTGAGATTTGATTCCCTCAATTTGAATGATCGTTATGTGCCTAATCTCCCCCATCATGTCAAAGCAGCTACTT CAAGTGATAAAGAAGCTGTTACTGGCAAGGGGTTGCGCGGTAAACTGAATAAGGTTGTTTTAGCTTACAGTGGCGGCTTAGACACATCAGTCATTGTGCC CTGGTTAAGGGAGAATTATGGCTGTGAGGTTGTCTGCTTTACTGCTGATGTTGGTCAAGGCATCAAAGAATTGGAAGGTTTGGAGCAGAAGGCCAAAGCT AGTGGAGCATGCCAATTAGTTGTTAGGGATTTACAGGAGGAATTTGTGAGGGACTACGTTTTCCCATGTCTCCGTGCTGGTGCAGTTTATGAAAGGAAAT ACTTGCTTGGAACGTCAATGGCTCGTCCCGTCATTGCTAAGGCCATGGTTGATGTTGCGAAAGAGGTTGGAGCTGATGCTGTGCGTTTTGAATTGACATT CTTTGCCTTAAACCCTGAGCTGAATGTTGTGGCTCCATGGAGAGAATGGGATATTCAAGGGAGGGAAGATGCTATTGAGTATGCGAAGAAGCATAACGTA CCAGTCCCTGTAACAAAGAAGTCTATATATAGCAGAGACCGGAACATTTGGCATTTGAGTCATGAGGGTGATATCTTGGAAGATCCAGCTAAAGAGCCTG AAAAGGATATGTACATGATGTCAGTGGCCCCAGAGGATGCACCAAACAAACCTCAATACGTTGACATCGGTATAGTCTCCGGGCTTCCTGTTTCGGTCAA CGGCAAGGAATTGTCACCAGCATCCCTGCTCGCCGAGCTCAACGAGATTGGTGGCAAACACGGCGTTGGTCGTATCGACATGGTCGAAAACCGTCTGGTT GGCATGAAAAGCCGCGGCGTGTACGAAACGCCAGGAGGTACTATACTCTTCTCTGCTGTACGTGAGCTGGAGTCTCTGACACTTGATAGAGAGACAATCC AAGTGAAGGACTCGCTGGCATTGAAGTACGCTGAGCTGGTTTATGCTGGTAGGTGGTTCGATCCGCTTCGCGAATCGATGGACGCATTCATGGAGAAGAT CATGGAAACAACTACTGGTTGTGTGACTCTGAAGCTTTACAAGGGGTCTGTTTCGGTAGTGGGGCGAACGAGTCCGAATAGTCTGTACAGGGAAGACATC GCGTCGTTTGAGAACGGGGAGATATATGATCAAGCTGATGCTGCTGGGTTTATTAGATTGTACGGCCTTCCCATGAGAGTGAGGGCAATGCTTGGAAAGG GTATCTGA
AA sequence Show only first row Show all	>Lus10013207 pacid=23166590 polypeptide=Lus10013207 locus=Lus10013207.g ID=Lus10013207.BGIv1.0 annot-version=v1.0 MPTIHSLCLLRFDSLNLNDRYVPNLPHHVKAATSSDKEAVTGKGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELEGLEQKAKA SGACQLVVRDLQEEFVRDYVFPCLRAGAVYERKYLLGTSMARPVIAKAMVDVAKEVGADAVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNV PVPVTKKSIYSRDRNIWHLSHEGDILEDPAKEPEKDMYMMSVAPEDAPNKPQYVDIGIVSGLPVSVNGKELSPASLLAELNEIGGKHGVGRIDMVENRLV GMKSRGVYETPGGTILFSAVRELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMEKIMETTTGCVTLKLYKGSVSVVGRTSPNSLYREDI ASFENGEIYDQADAAGFIRLYGLPMRVRAMLGKGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24830			arginosuccinate synthase famil...		Lus10013207 [exp]	0	1
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	3.2	0.8984
AT1G74030		ENO1	enolase 1 (.1)		Lus10027255 [exp]	3.5	0.8934
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	7.7	0.8672
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	8.8	0.8361
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	10.0	0.8219
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	11.7	0.8643
AT3G12150			unknown protein		Lus10027799 [exp]	14.7	0.7836
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	14.8	0.8621
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	15.3	0.8442
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10025815 [exp]	16.4	0.8227

Compare expression of checked genes

Lus10013207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.