Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35300 780 / 0 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5) AT1G20840 718 / 0 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT3G51490 693 / 0 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT3G18830 122 / 4e-29 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G30220 118 / 2e-27 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G35740 117 / 4e-27 ATINT3 nositol transporter 3 (.1) AT4G16480 114 / 2e-26 ATINT4 inositol transporter 4 (.1) AT5G16150 110 / 4e-25 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G16120 109 / 5e-25 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 109 / 7e-25 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030726 [exp] 1161 / 0 AT4G35300 962 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022988 [exp] 840 / 0 AT4G35300 1095 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001386 [exp] 820 / 0 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001385 [exp] 818 / 0 AT4G35300 1071 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022989 [exp] 726 / 0 AT4G35300 977 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10012709 [exp] 629 / 0 AT3G51490 818 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10010886 [exp] 620 / 0 AT3G51490 822 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10017561 [exp] 124 / 2e-29 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 122 / 7e-29 AT4G16480 823 / 0.0 inositol transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G255400 [exp] 931 / 0 AT4G35300 915 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.002G006200 [exp] 930 / 0 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.009G168500 [exp] 825 / 0 AT4G35300 934 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G207100 [exp] 823 / 0 AT4G35300 965 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G098900 [exp] 714 / 0 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G151725 [exp] 126 / 2e-30 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 124 / 1e-29 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G015300 [exp] 123 / 3e-29 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.009G113600 [exp] 115 / 1e-26 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 113 / 4e-26 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10013208 pacid=23166670 polypeptide=Lus10013208 locus=Lus10013208.g ID=Lus10013208.BGIv1.0 annot-version=v1.0 ATGAACGGAGCAGCACTCGTAGCTATCGCCGCTTGTATTGGCAACTTCTTGCAAGGCTGGGATAATGCTACAATTGCTGGAGCAATTGTGTATATAAAGA AGGATCTAGCTCTGGGCAGCAGTGTGGAAGGACTTGTTGTGGCCATGTCACTAATTGGCGCCACGGCAATCACAACATGTTCCGGACCGATTTCGGATTG GCTCGGTCGAAGGCCAATGCTGATCATTTCATCAGTTCTGTACTTCATAGGTGGACTTGTTATGCTGTGGTCGCCCAATGTGTATGTGTTGTGTTTGGCT AGGCTGCTGGATGGATTTGGGATTGGCTTGGCAGTGACTCTTGTCCCTCTGTACATATCCGAGACTGCCCCTTCCGATATAAGAGGGCAGCTGAACACGC TCCCTCAGTTCACTGGGTCTGCGGGCATGTTCTTGTCATATTGTATGGTTTTCGGGATGTCGTTGTTGCCTTCCCCGAGTTGGAAGTTGATGCTCGGGGT TCTGTCACTTCCCTCGCTGCTGTACTTTGCGTTGACTGTGTTTTACTTGCCTGAATCGCCTCGTTGGCTCGTTAGCAAAGGCAAAATGCTCGAGGCCCGA CGAGTTCTCCAGCGACTTAGGGGCGTGGAGGATGTTTCAGGTTTGGCGCTTCTTACCATTTTAGCTCTTCCTAAAGGTGAGTTAGCTTTGCTAGTAGAAG GCCTGGGCCTCGGAGGAGAGACATCTATAGAAGATTATGTAATAGGTCCAGGAGATGAAATTGCTGATGATAATCATGTATTTGATTCTGAAAAAGACAG AATCAGACTATACGGCCCTGAGCAGGGCCAGTCGTGGGTTGCTAAGCCAGCAACCCGTCGACAAAGTTCACTAGCTCTTGCGTCTCGACAAGGGAGCATG GTGAGCCACAATGTGCCTCTAATGGACCCTCTAGTGACTCTTTTCGGCAGTGTCCACGAAAAGGTCCCAGAGTCAGGAAGCATGAGAAGCATGATCTTCC CAACTTTTGGTAGCATGTTTAGTACAGCGGAACCCCCAATGAAGCATGATCATTGGGACGAAGAGAGCCTACATGGAGAAGGTGAAGGCTATAGATCAGA TGATGCTAGCGGTGGAGAAGATTCCGGAGATGATCATGATCATCTGCATAGTCCTTTGATAACCCATGGCAGTAACTTGGGTAGTATACGACACCATAGC AGTCTCTTCAATGGCGAGACGGTTGGAAGCACTGGGATTGGAGGTGGGTGGCAGTTGGCGTGGCAGTGGTCCGAGAACGAAGGAGAGGGTGGGAAGAAAG AAGGGGGTTTTAAAAGGGTGTACTTGCACCAGGAAGGAGGAGGTGCTGGAACTCGACGAGGTTCCATTGTGTCGATTCACGGTGGTGAAGTGCAAGGAGA TGGTGGTGATTATGTTCAGGCAGCTGCTCTTGTAAGCCAGCCAGCTTTGTATTCCAAATCTCTGATAGAGCAGCATCCAGTTGGTCCTGCAATGGTTCAT CCATCTGAGACTGCTGGTAAAGGCCCGGTTTGGGCTGCTTTACTTGATCCTGGAGTTAAGAGTGCTCTGATCGTTGGGATGGGAATTCAGATTCTTCAAC AGTTTTCTGGTATAAATGGTGTTCTGTACTATACACCTCAAATTCTTCAAGAAGCAGGAGTTGGAGTATTGCTTGCAAACTTAGGCATCAGCTCGGAATC CTCATCTTTCCTCATTAGTGCATTCACTACCTTGCTGATGCTTCCTTGCATCGGCATCGCCATGCGCCTCATGGATATCTCAGGCAGAAGATCATTGCTG CTCACCACGATCCCGGTGCTTATTTTCTCGCTCATCATCCTAGTCGTAAGTAGACTCGTCGAGCTTTCCTCTGTCGTCAATGCAGTCATCTCCACAGCTT GTGTCATCGTCTACTTCTGCTGCTTTGTTGCGGCCTATGGTCCGATCCCGAACATCCTCTGCGCGGAGATATTCCCTACGAGAGTACGGGGTCTCTGCAT CGCAATCTGCGCGTTGGTTTTCTGGGTGGGAGACATCATCGTCACCTACACCCTGCCTGTGATGCTGAGTTCGATCGGTCTTGGTGGTGCATTCGGCATT TATGCAGTCGTGTGTGTTGTTTCTTGGGTGTTTGTGTTCTTGAAGGTCCCCGAGACCAAAGGCATGCCTCTTGAAGTCATCACCGAGTTCTTCGCTGTCG GGGCCCGACAAGCTGCGGCTGCGAAGAACGAGTGA
AA sequence Show only first row Show all	>Lus10013208 pacid=23166670 polypeptide=Lus10013208 locus=Lus10013208.g ID=Lus10013208.BGIv1.0 annot-version=v1.0 MNGAALVAIAACIGNFLQGWDNATIAGAIVYIKKDLALGSSVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLIISSVLYFIGGLVMLWSPNVYVLCLA RLLDGFGIGLAVTLVPLYISETAPSDIRGQLNTLPQFTGSAGMFLSYCMVFGMSLLPSPSWKLMLGVLSLPSLLYFALTVFYLPESPRWLVSKGKMLEAR RVLQRLRGVEDVSGLALLTILALPKGELALLVEGLGLGGETSIEDYVIGPGDEIADDNHVFDSEKDRIRLYGPEQGQSWVAKPATRRQSSLALASRQGSM VSHNVPLMDPLVTLFGSVHEKVPESGSMRSMIFPTFGSMFSTAEPPMKHDHWDEESLHGEGEGYRSDDASGGEDSGDDHDHLHSPLITHGSNLGSIRHHS SLFNGETVGSTGIGGGWQLAWQWSENEGEGGKKEGGFKRVYLHQEGGGAGTRRGSIVSIHGGEVQGDGGDYVQAAALVSQPALYSKSLIEQHPVGPAMVH PSETAGKGPVWAALLDPGVKSALIVGMGIQILQQFSGINGVLYYTPQILQEAGVGVLLANLGISSESSSFLISAFTTLLMLPCIGIAMRLMDISGRRSLL LTTIPVLIFSLIILVVSRLVELSSVVNAVISTACVIVYFCCFVAAYGPIPNILCAEIFPTRVRGLCIAICALVFWVGDIIVTYTLPVMLSSIGLGGAFGI YAVVCVVSWVFVFLKVPETKGMPLEVITEFFAVGARQAAAAKNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	2.8	0.9506
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10035693 [exp]	5.9	0.9431
AT3G13130			unknown protein		Lus10004415 [exp]	6.0	0.9449
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	6.5	0.9478
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	7.3	0.9344
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10028752 [exp]	7.7	0.9131
AT1G47330			CBS domain-containing protein ...		Lus10032715 [exp]	8.3	0.9022
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	10.4	0.9437
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10015069 [exp]	11.2	0.9046
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	11.8	0.8971

Compare expression of checked genes

Lus10013208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.